Difference between revisions of "2012 Summer Project Week:Reporting"
From NAMIC Wiki
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* BWH: Andrey Fedorov, Nicole Aucoin, Steve Pieper, Ron Kikinis, Fiona Fennessy | * BWH: Andrey Fedorov, Nicole Aucoin, Steve Pieper, Ron Kikinis, Fiona Fennessy | ||
* Northwestern U: Pat Mongklowat | * Northwestern U: Pat Mongklowat | ||
| + | * Kitware: JC | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| + | |||
| + | * we worked on integrating the Reporting module as a Slicer extension | ||
| + | ** work is taking place in the git branch here: https://github.com/fedorov/Reporting/tree/extension | ||
| + | ** application key has been obtained following the guidelines | ||
| + | ** Reporting extension ExperimentalUpload build has been accomplished and the packaged extension has been uploaded: http://slicer.cdash.org/buildSummary.php?buildid=25213 | ||
| + | ** issue has been identified in testing infrastructure that causes unit test to crash, JC is working on it | ||
| + | * integration of DICOM SEG support has been discussed as part of DICOM breakout (see notes here: [[2012_Summer_Project_Week_Breakout_Session:Slicer_DICOM]]) | ||
| + | * we worked on compiling AIM 3.0 API on Mac, but not succeeded | ||
| + | * discussed with the AIM experts the details of saving annotations: only one annotation and image reference should be saved per AIM file, if the AIM format is to be followed precisely | ||
</div> | </div> | ||
Revision as of 23:54, 21 June 2012
Home < 2012 Summer Project Week:Reporting
Key Investigators
- BWH: Andrey Fedorov, Nicole Aucoin, Steve Pieper, Ron Kikinis, Fiona Fennessy
- Northwestern U: Pat Mongklowat
- Kitware: JC
Objective
As part of BWH QIN project, we are working on implementing support for
- organizing Slicer markup and annotations into hierarchies to maintain their relationship with the original volumes
- export these hierarchies and Slicer internal data structures into other formats (e.g., AIM)
This development is currently happening within Reporting module (available on github).
Approach, Plan
- present the capabilities of the Reporting module to the interested groups
- discuss the missing features and roadmap for future development
- cross-check with the AIM experts (Pat) that the AIM output is correct
- discuss the possibility of integrating Reporting module with the native AIM API, which is currently under development by Pat Mongklowat's group
- consider integrating Reporting as an extension
- discuss how support of DICOM SEG should be integrated into Slicer
- connection/extension of DICOM SEG and the lookup table concept of Slicer
Progress
- we worked on integrating the Reporting module as a Slicer extension
- work is taking place in the git branch here: https://github.com/fedorov/Reporting/tree/extension
- application key has been obtained following the guidelines
- Reporting extension ExperimentalUpload build has been accomplished and the packaged extension has been uploaded: http://slicer.cdash.org/buildSummary.php?buildid=25213
- issue has been identified in testing infrastructure that causes unit test to crash, JC is working on it
- integration of DICOM SEG support has been discussed as part of DICOM breakout (see notes here: 2012_Summer_Project_Week_Breakout_Session:Slicer_DICOM)
- we worked on compiling AIM 3.0 API on Mac, but not succeeded
- discussed with the AIM experts the details of saving annotations: only one annotation and image reference should be saved per AIM file, if the AIM format is to be followed precisely
Delivery Mechanism
Reporting module is available as a Slicer4 loadable module, source code available on github: https://github.com/fedorov/Reporting
References
- Slicer AIM integration project: AIM_Annotations_integration_with_3DSlicer
- Reporting module source code: https://github.com/fedorov/Reporting
