Difference between revisions of "2012 Summer Project Week:Reporting"
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Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]] | Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]] | ||
| + | Image:Slicer4_Reporting_GUI.png|Reporting module GUI | ||
| + | Image:Slicer4_Reporting_extension.png|Reporting extension (do not try it yet! :) | ||
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** application key has been obtained following the guidelines | ** application key has been obtained following the guidelines | ||
** Reporting extension ExperimentalUpload build has been accomplished and the packaged extension has been uploaded: http://slicer.cdash.org/buildSummary.php?buildid=25213 | ** Reporting extension ExperimentalUpload build has been accomplished and the packaged extension has been uploaded: http://slicer.cdash.org/buildSummary.php?buildid=25213 | ||
| − | ** issue has been identified in testing infrastructure that causes unit test to crash, JC | + | ** issue has been identified in testing infrastructure that causes unit test to crash, fixed by JC http://www.na-mic.org/Bug/view.php?id=2248 |
| + | ** it was identified that loading DICOM scalar volumes leads to a crash, preventing the use of Reporting module, bug report submitted: http://www.na-mic.org/Bug/view.php?id=2241 | ||
| + | ** another related bug submitted: http://www.na-mic.org/Bug/view.php?id=2251 | ||
* integration of DICOM SEG support has been discussed as part of DICOM breakout (see notes here: [[2012_Summer_Project_Week_Breakout_Session:Slicer_DICOM]]) | * integration of DICOM SEG support has been discussed as part of DICOM breakout (see notes here: [[2012_Summer_Project_Week_Breakout_Session:Slicer_DICOM]]) | ||
* we worked on compiling AIM 3.0 API on Mac, but not succeeded | * we worked on compiling AIM 3.0 API on Mac, but not succeeded | ||
Latest revision as of 15:23, 22 June 2012
Home < 2012 Summer Project Week:Reporting
Reporting module GUI
Reporting extension (do not try it yet! :)
Key Investigators
- BWH: Andrey Fedorov, Nicole Aucoin, Steve Pieper, Ron Kikinis, Fiona Fennessy
- Northwestern U: Pat Mongklowat
- Kitware: JC
Objective
As part of BWH QIN project, we are working on implementing support for
- organizing Slicer markup and annotations into hierarchies to maintain their relationship with the original volumes
- export these hierarchies and Slicer internal data structures into other formats (e.g., AIM)
This development is currently happening within Reporting module (available on github).
Approach, Plan
- present the capabilities of the Reporting module to the interested groups
- discuss the missing features and roadmap for future development
- cross-check with the AIM experts (Pat) that the AIM output is correct
- discuss the possibility of integrating Reporting module with the native AIM API, which is currently under development by Pat Mongklowat's group
- consider integrating Reporting as an extension
- discuss how support of DICOM SEG should be integrated into Slicer
- connection/extension of DICOM SEG and the lookup table concept of Slicer
Progress
- we worked on integrating the Reporting module as a Slicer extension
- work is taking place in the git branch here: https://github.com/fedorov/Reporting/tree/extension
- application key has been obtained following the guidelines
- Reporting extension ExperimentalUpload build has been accomplished and the packaged extension has been uploaded: http://slicer.cdash.org/buildSummary.php?buildid=25213
- issue has been identified in testing infrastructure that causes unit test to crash, fixed by JC http://www.na-mic.org/Bug/view.php?id=2248
- it was identified that loading DICOM scalar volumes leads to a crash, preventing the use of Reporting module, bug report submitted: http://www.na-mic.org/Bug/view.php?id=2241
- another related bug submitted: http://www.na-mic.org/Bug/view.php?id=2251
- integration of DICOM SEG support has been discussed as part of DICOM breakout (see notes here: 2012_Summer_Project_Week_Breakout_Session:Slicer_DICOM)
- we worked on compiling AIM 3.0 API on Mac, but not succeeded
- discussed with the AIM experts the details of saving annotations: only one annotation and image reference should be saved per AIM file, if the AIM format is to be followed precisely
Delivery Mechanism
Reporting module is available as a Slicer4 loadable module, source code available on github: https://github.com/fedorov/Reporting
References
- Slicer AIM integration project: AIM_Annotations_integration_with_3DSlicer
- Reporting module source code: https://github.com/fedorov/Reporting
