2014 Project Week:TBISegmentation

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Key Investigators

  • GE: Marcel Prastawa
  • Utah: Bo Wang, Guido Gerig
  • USC: Andrei Irimia, Jack Van Horn


Project Description

Objective

  • Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
  • Study and gain understanding of the manual process for segmenting TBI.
  • Test the algorithm with users from USC.

Approach, Plan

  • Wrap existing code into a Slicer extension.
  • Determine approaches for user interaction for semi-automatic segmentation.
  • Test and evaluate Slicer modules for TBI processing:
    • Intra and inter time points coregistration.
    • Initial atlas alignment using affine transformation.
    • Skull stripping to obtain initial brain mask.

Progress

Reference