Difference between revisions of "2015 Summer Project Week:BigDataFeatures"

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* Raul San Jose Estepar, BWH, Harvard Medical School
 
* Raul San Jose Estepar, BWH, Harvard Medical School
 
* Tina Kapur, BWH, Harvard Medical School
 
* Tina Kapur, BWH, Harvard Medical School
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* Utsav Pardasani, Robarts (Observing!)
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* Salvatore Scaramuzzino (Interested!)
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* Andrey Fedorov, BWH
  
==Previous Work: 3D SIFT-Rank Visualization, SLC 2015==
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==3D SIFT-Rank Visualization, SLC 2015, IPMI 2015 ==
[[File:3D_SIFT_Lung.png|400px|thumb|left|Lung CT]]
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[[File:Lung-ct.png|300px|thumb|left|Lung CT Features]]
[[File:3D_SIFT_Prostate.png|300px|thumb|left|Prostate US]]
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[[File:Img-feat.png‎|300px|thumb|left|Data Reduction for 20000 lung CT volumes]]
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[[File:3D_SIFT_Prostate.png|300px|thumb|left|Prostate US Features]]
  
 
==Project Description==
 
==Project Description==
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<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Progress</h3>
 
<h3>Progress</h3>
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1) Discussed applications of 3D SIFT-Rank
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* Analyzing COPD - lung CT - Raul San Jose Estepar
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* Identifying similar cases - general MR/CT/US - Tobias Penzkofer
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* Infant brain analysis - brain MR - Steve Pieper
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* Prostate segmentation - MR/US - Andrey Federov, Salvatore Scaramuzzino
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* Astronomical galaxy classification - radio data cube (lambda=21cm) - Davide Punzo
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2) Coding for kernel regression framework (C++)
 
</div>
 
</div>
 
</div>
 
</div>
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[http://www.na-mic.org/Wiki/index.php/3D_SIFT_VIEW] SIFT View, NAMIC 2015 SLC Project Week <br>
 
[http://www.na-mic.org/Wiki/index.php/3D_SIFT_VIEW] SIFT View, NAMIC 2015 SLC Project Week <br>
 
[http://www.matthewtoews.com/publications.html] "A Feature-based Approach to Big Data Analysis of Medical Images", M. Toews, C. Wachinger, R. S. J. Estepar, W.M. Wells III.  
 
[http://www.matthewtoews.com/publications.html] "A Feature-based Approach to Big Data Analysis of Medical Images", M. Toews, C. Wachinger, R. S. J. Estepar, W.M. Wells III.  
Information Processing in Medical Imaging (IPMI), 2015.
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Information Processing in Medical Imaging (IPMI), 2015.<br>
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[http://www.matthewtoews.com/publications.html] "Keypoint Transfer Segmentation", C. Wachinger, M. Toews, G. Langs, W.M. Wells IIIi, P. Golland. Information Processing in Medical Imaging (IPMI), 2015.

Latest revision as of 15:17, 24 June 2015

Home < 2015 Summer Project Week:BigDataFeatures

Key Investigators

  • Matthew Toews, École de Technologie Supérieure
  • William Wells, BWH, Harvard Medical School
  • Raul San Jose Estepar, BWH, Harvard Medical School
  • Tina Kapur, BWH, Harvard Medical School
  • Utsav Pardasani, Robarts (Observing!)
  • Salvatore Scaramuzzino (Interested!)
  • Andrey Fedorov, BWH

3D SIFT-Rank Visualization, SLC 2015, IPMI 2015

Lung CT Features
Data Reduction for 20000 lung CT volumes
Prostate US Features

Project Description

Objective

  • This project will investigate the use of 3D SIFT-RANK image features for organizing and deriving information from 3D medical image volumes.
  • Technology: invariant feature extraction, descriptor representation.
  • Application domains: registration, segmentation, classification.
  • Image domains: lung CT, brain MR, prostate and brain ultrasound.
  • Clinical use case scenarios: chronic obstructive pulmonary disease, Alzheimer's disease, cancer.

Approach, Plan

  • Discussion and documentation
  • Algorithms: fast KNN methods, hashing, robust estimation (RANSAC, Hough transform).
  • Mathematical formalisms: probabilistic inference, kernel methods, manifold learning.

Progress

1) Discussed applications of 3D SIFT-Rank

  • Analyzing COPD - lung CT - Raul San Jose Estepar
  • Identifying similar cases - general MR/CT/US - Tobias Penzkofer
  • Infant brain analysis - brain MR - Steve Pieper
  • Prostate segmentation - MR/US - Andrey Federov, Salvatore Scaramuzzino
  • Astronomical galaxy classification - radio data cube (lambda=21cm) - Davide Punzo

2) Coding for kernel regression framework (C++)

References

[1] SIFT View, NAMIC 2015 SLC Project Week
[2] "A Feature-based Approach to Big Data Analysis of Medical Images", M. Toews, C. Wachinger, R. S. J. Estepar, W.M. Wells III. Information Processing in Medical Imaging (IPMI), 2015.
[3] "Keypoint Transfer Segmentation", C. Wachinger, M. Toews, G. Langs, W.M. Wells IIIi, P. Golland. Information Processing in Medical Imaging (IPMI), 2015.