Difference between revisions of "2016 Winter Project Week/Projects/SlicerOpenCVExtension"

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==Project Description==
 
==Project Description==
 
{| class="wikitable"
 
{| class="wikitable"
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! style="text-align: left; width:27%" |  Objective
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! style="text-align: left; width:27%" |  Approach and Plan
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! style="text-align: left; width:27%" |  Progress and Next Steps
 
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|- style="vertical-align:top;"
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! style="text-align: left; width:27%" |       Objective
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<!-- Add a bulleted list of key points -->
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<!-- Objective bullet points -->
 
* Add an extension to the Slicer extension repository that provides OpenCV as a library
 
* Add an extension to the Slicer extension repository that provides OpenCV as a library
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! style="text-align: left; width:27%" |       Approach, Plan
 
 
<!-- Add a bulleted list of key points -->
 
<!-- Add a bulleted list of key points -->
 
* Create CMake files to check out and build OpenCV as an external project
 
* Create CMake files to check out and build OpenCV as an external project
 
* Create CMake files to check out and build the ITK OpenCV bridge as an external project
 
* Create CMake files to check out and build the ITK OpenCV bridge as an external project
 
* Provide examples on how to use OpenCV from Slicer
 
* Provide examples on how to use OpenCV from Slicer
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! style="text-align: left; width:27%" |     Progress
 
 
<!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next -->
 
<!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next -->
 
* [https://github.com/naucoin/SlicerOpenCV SlicerOpenCV]
 
* [https://github.com/naucoin/SlicerOpenCV SlicerOpenCV]
 
** CMake file created to build OpenCV
 
** CMake file created to build OpenCV
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** Enabling the ITK OpenCV Bridge:
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*** The Slicer version of ITK needed changes from this patch in order to be able to build with the module enabled: [https://github.com/InsightSoftwareConsortium/ITK/commit/412dd83a680cc024c12f971ec57f76881c7eab78 COMP: simplify ITKVideoBridgeOpenCV dependency]
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*** Building the bridge outside of the source referred to ITK mailing list posts:
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**** [http://itk-users.7.n7.nabble.com/Problems-building-ITK-Snap-outside-the-Insight-Applications-tree-td14733.html Building ITK SNAP outside of the application]
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**** New post: [http://public.kitware.com/pipermail/community/2015-December/010521.html Building BridgeOpenCV outside of ITK]
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*** Consulted with Jim on best practices for building ITK and linking to libs and include dirs
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*** Worked with JC to craft CMake files to build the bridge
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**** Pointed to relevant blog post: [http://www.kitware.com/blog/home/post/997 Build ITK Modules Outside the Main Repository]
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*** Matt McCormick proposed a patch to ITK to enable building the bridge outside of ITK: [http://review.source.kitware.com/#/c/20633/3 Allow ITKVideoBridgeOpenCV to be built externally.]
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*** Extension topic branch builds against the ITK trunk version of the bridge with Matt's patch, and loads into Slicer: [https://github.com/naucoin/SlicerOpenCV/tree/Enable-ITK-BridgeOpenCV Enable-ITK-BridgeOpenCV]
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*** To do:
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**** patch Slicer's branch of ITK
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**** set up dependency with the digital pathology module so that it uses this version of OpenCV
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|}
  
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==Background and References==
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<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
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* Project begun to support [http://wiki.na-mic.org/Wiki/index.php/2016_Winter_Project_Week/Projects/DigitalPathologyNuclearSegmentation Digital Pathology Nuclear Segmentation]
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* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Labs/OpenCV OpenCV integration on Slicer Labs]

Latest revision as of 18:55, 14 January 2016

Home < 2016 Winter Project Week < Projects < SlicerOpenCVExtension

Key Investigators

  • Nicole Aucoin (BWH)
  • Erich Bremmer (Stonybrook)
  • Andrey Fedorov (BWH)

Project Description

Objective Approach and Plan Progress and Next Steps
  • Add an extension to the Slicer extension repository that provides OpenCV as a library
  • Create CMake files to check out and build OpenCV as an external project
  • Create CMake files to check out and build the ITK OpenCV bridge as an external project
  • Provide examples on how to use OpenCV from Slicer

Background and References

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