Difference between revisions of "2017 Winter Project Week/WhiteMatterAnalysis"

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Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]
 
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Image:Left CB.png|Left-view Cerebellum
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Image:Left ParsOp.png|Left-view Pars Opercularis
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<!-- Add a bulleted list of investigators and their institutions here -->
 
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* Fan Zhang, BWH
 
* Fan Zhang, BWH
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* Shun Gong, BWH
 
* Isaiah Norton, BWH
 
* Isaiah Norton, BWH
 
* Ye Wu, BWH
 
* Ye Wu, BWH
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==Project Description==
 
==Project Description==
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This project is part of the whitematteranalysis software that provides an automated whole brain tractgoraphy registration and segmentation framework. The aim of this project is to integrate a new Slicer module FiberEndpointAnalysis into the whitematteranalysis pipeline.
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! style="text-align: left; width:27%" |  Objective
 
! style="text-align: left; width:27%" |  Objective
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<!-- Objective bullet points -->
 
<!-- Objective bullet points -->
* Update tutorials related to modules in SlicerDMRI
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Calculate the overlap of fiber tract (endpoint regions) with anatomical parcellation (e.g. freesurfer) or functional region (e.g. fMRI).
* Release new modules
 
 
|
 
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<!-- Approach and Plan bullet points -->
 
<!-- Approach and Plan bullet points -->
*  
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* Release the FiberEndPointFromLabelMap module as part of SandBox in SlicerDMRI.
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* Integrate the module into the whitematteranalysis software.
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* Testing and documentation about the new functionality.
 
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|
 
<!-- Progress and Next steps bullet points (fill out at the end of project week) -->
 
<!-- Progress and Next steps bullet points (fill out at the end of project week) -->
*
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* Done: Module released in SandBox: https://github.com/SlicerDMRI/Sandbox
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* Done: Integrate EndpointAnalysis into whitematteranalysis: https://github.com/SlicerDMRI/whitematteranalysis
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* Done: Documentation: https://github.com/SlicerDMRI/whitematteranalysis/wiki/Running-the-Clustering-Pipeline#commands-to-do-endpoint-analysis
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* Done: Testing finished.
 
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==Background and References==
 
==Background and References==
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
SlicerDMRI: http://slicerdmri.github.io
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*SlicerDMRI: http://slicerdmri.github.io
WhiteMatterAnalysis: https://github.com/SlicerDMRI/whitematteranalysis
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*WhiteMatterAnalysis: https://github.com/SlicerDMRI/whitematteranalysis

Latest revision as of 15:53, 13 January 2017

Home < 2017 Winter Project Week < WhiteMatterAnalysis

Key Investigators

  • Fan Zhang, BWH
  • Shun Gong, BWH
  • Isaiah Norton, BWH
  • Ye Wu, BWH
  • Lauren J. O'Donnell, BWH

Project Description

This project is part of the whitematteranalysis software that provides an automated whole brain tractgoraphy registration and segmentation framework. The aim of this project is to integrate a new Slicer module FiberEndpointAnalysis into the whitematteranalysis pipeline.

Objective Approach and Plan Progress and Next Steps

Calculate the overlap of fiber tract (endpoint regions) with anatomical parcellation (e.g. freesurfer) or functional region (e.g. fMRI).

  • Release the FiberEndPointFromLabelMap module as part of SandBox in SlicerDMRI.
  • Integrate the module into the whitematteranalysis software.
  • Testing and documentation about the new functionality.

Background and References