Difference between revisions of "DBP3:Utah:SlicerModulePVAntrumCut"

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__NOTOC__
 
__NOTOC__
===CARMA Left Atrium Isolation Filter===
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===CMR Toolkit PV Antrum Cut Filter===
  
 
{|
 
{|
|[[Image:Slicer_Shrink_Wrap_Screenshot.jpg|thumb|280px|(Clockwise from top left) LA Wall Layer, LA Endo Layer, and LA Endo Layer with Pulmonary Veins Removed]]
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|[[Image:PVAntrumCutFilter.jpg|thumb|280px|(Clockwise from top right) LA Wall Layer, LA Endo Layer, and LA Endo Layer with Pulmonary Veins Removed]]
 
|}
 
|}
  
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Type: CLI
 
Type: CLI
  
Category: CARMA
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Category: Cardiac MRI Toolkit
  
 
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==Module Description==
 
==Module Description==
This module creates a cardiac MRI segmentation mask called the Shrink Wrap mask by isolating the left atrium segmentation. The inputs are the left atrium endocardial segmentation and the left atrium wall segmentation. The output mask represents the entire left atrium endocardial layer minus the pulmonary veins (PVs). This mask can be used to calculate the early diastolic (peak) volume of the left atrium (LA).  
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This module creates a cardiac MRI segmentation mask called the PV Antrum Cut mask by removing the pulmonary veins (PVs) from the left atrium (LA) segmentation. The inputs are the LA endocardial segmentation and the LA endocardial wall segmentation. The output mask represents the entire LA endocardial layer minus the PVs. This mask can be used to calculate the early diastolic (peak) volume of the LA.  
  
 
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===Examples, Use Cases & Tutorials===
 
===Examples, Use Cases & Tutorials===
 
* This module is meant to be used for removing the PV regions from the LA endocardial segmentation.  
 
* This module is meant to be used for removing the PV regions from the LA endocardial segmentation.  
* [[Media:CARMA_Shrink_Wrap_Filter_Tutorial.pptx|CARMA Left Atrium Isolation Filter Tutorial]]
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* [[Media:Carma_PVAntrumCutFilter_Tutorial_New.pptx|CARMA PV Antrum Cut Filter Tutorial]]
  
 
===Quick Tour of Features and Use===
 
===Quick Tour of Features and Use===
  
The following are the inputs and outputs
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The following are the inputs and outputs:
 
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* Endo Layer : Select the LA endocardial segmentation label mask
* Endo Layer : Select the LA endocardial segmentation image
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* Wall Layer : Select the LA wall segmentation label mask
* Wall Layer : Select the LA wall segmentation image
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* Endo Layer No Veins: The output label mask
* Endo Layer No Veins: The output mask
 
  
 
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== Development ==
 
== Development ==
 
===Known bugs===
 
 
Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker.
 
 
===Usability issues===
 
 
Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker. Please select the '''usability issue category''' when browsing or contributing.
 
  
 
===Source code & documentation===
 
===Source code & documentation===
  
Customize following [http://www.na-mic.org/ViewVC/index.cgi/ links] for your module.
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The source code for this module can be found at the [https://github.com/carma-center/carma_slicer_extension/ GitHub repository].
 
 
[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.
 
  
 
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<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
== More Information ==
 
 
===Acknowledgment===
 
Include funding and other support here.
 
 
===References===
 
Publications related to this module go here. Links to pdfs would be useful.
 
  
 
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Latest revision as of 19:54, 29 July 2013

Home < DBP3:Utah:SlicerModulePVAntrumCut

CMR Toolkit PV Antrum Cut Filter

(Clockwise from top right) LA Wall Layer, LA Endo Layer, and LA Endo Layer with Pulmonary Veins Removed

Authors, Collaborators & Contact

  • CARMA Center, University of Utah: Alan Morris, Salma Bengali, Greg Gardner, Josh Cates, Rob MacLeod

General Information

Module Type & Category

Type: CLI

Category: Cardiac MRI Toolkit

Module Description

This module creates a cardiac MRI segmentation mask called the PV Antrum Cut mask by removing the pulmonary veins (PVs) from the left atrium (LA) segmentation. The inputs are the LA endocardial segmentation and the LA endocardial wall segmentation. The output mask represents the entire LA endocardial layer minus the PVs. This mask can be used to calculate the early diastolic (peak) volume of the LA.

Usage

Examples, Use Cases & Tutorials

Quick Tour of Features and Use

The following are the inputs and outputs:

  • Endo Layer : Select the LA endocardial segmentation label mask
  • Wall Layer : Select the LA wall segmentation label mask
  • Endo Layer No Veins: The output label mask

Development

Source code & documentation

The source code for this module can be found at the GitHub repository.