Difference between revisions of "IGT:ToolKit/Prostate-Planning"

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Back to [[IGT:ToolKit|IGT:ToolKit]]
 
Back to [[IGT:ToolKit|IGT:ToolKit]]
  
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=Neurosurgical Planning for Image Guided Therapy using Slicer3=
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=Prostate Therapy Planning Tutorial=
  
 
==Overview==
 
==Overview==
  
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This tutorial reviews Slicer3's Image Guided Therapy capabilities using the example of preoperative planning for neurosurgery.  It covers how to perform multiple tasks in Slicer3, including:
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This tutorial gives an example of using Slicer3 for MRI-guided prostate interventions.  Topics covered include:
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* Image registration
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* Clinical background on MRI-guided prostate interventions
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* Segmentation and model making
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* Non-rigid image registration using B-splines
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* Diffusion Tensor Imaging and tractography
 
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* Using an atlas
 
  
 
==Tutorial Materials==
 
==Tutorial Materials==
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* Tutorial slides for the neurosurgical planning tutorial:  [[Media:ImageGuidedTherapyPlanning.pdf | pdf]] (recommended) or [[Media:ImageGuidedTherapyPlanning.ppt | ppt]]
 
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* [[Media:NeurosurgicalPlanningTutorialData.zip | Neurosurgical planning tutorial dataset]] - contains:
 
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** Patient dataset
 
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** SPL-PNL brain atlas
 
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** MRML scene registering the patient with the atlas
 
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** MRML scene registering the patient's anatomical MRI with the patient's DTI
 
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** MRML scene registering of precomputed tensor data for the patient's DTI
 
  
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==Bonus Materials==
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* Tutorial slides for the MRI-guided prostate interventions tutorial:  [[Media:MRGuidedProstateInterventions.pdf| pdf]] (recommended) or [[Media:MRGuidedProstateInterventions.ppt | ppt]]
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This is a subset of the data above, which demonstrates some of the capabilities of the tractography package in Slicer 3.3. Snapshots 1-4 demonstrate a progression of the analysis of the interrelation of the morphology and DTI.
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* [[Media:NeurosurgicalPlanningTutorialData.zip | MRI-guided prostate interventions tutorial dataset]] - contains:
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#general view
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** Pre-operative high-quality MRI image
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#location of the precentral gyrus based the surface of the white matter
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** Intra-operative MRI image
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#peritumoral seeding of tractography: The general appearance is that of a "ball of spaghettis" with two tentacles,
 
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#exploration of the "tentacles": fiducial based seeding in the cerebral peduncle and in the vicinity of Brocca's area reveal potential corticospinal tract and acuate fasciculus
 
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*[[media:NeurosurgDTIdemo2008.zip|Original MRML scene and data in a zip file]]
 
  
 
==Software Installation Instructions==
 
==Software Installation Instructions==
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* [http://www.spl.harvard.edu/~dpace Danielle Pace]
 
* [http://www.spl.harvard.edu/~dpace Danielle Pace]
 
* [http://www.spl.harvard.edu/~noby Nobuhiko Hata]
 
* [http://www.spl.harvard.edu/~noby Nobuhiko Hata]
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[[Media:MRGuidedProstateInterventions.ppt |
 
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Final version for London training event]]
 
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Dataset for London training event:  [[Media:MRGuidedProstateInterventions.zip | MRGuidedProstateInterventions.zip]]
 

Revision as of 20:34, 25 November 2008

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ProstatePlanningOverview.jpg

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Prostate Therapy Planning Tutorial

Overview

This tutorial gives an example of using Slicer3 for MRI-guided prostate interventions. Topics covered include:

  • Clinical background on MRI-guided prostate interventions
  • Non-rigid image registration using B-splines

Tutorial Materials

Software Installation Instructions

Go to the Slicer3 Install site.

People

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