Difference between revisions of "Measuring Alcohol Stress Interaction"
From NAMIC Wiki
| Line 33: | Line 33: | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
* ChangeTracker augmented with the capability to accept externally-defined segmentation ([http://svn.na-mic.org/NAMICSandBox/trunk/ChangeTrackerExtra/ChangeTrackerVT/ ChangeTrackerVT] in NAMIC Sandbox) | * ChangeTracker augmented with the capability to accept externally-defined segmentation ([http://svn.na-mic.org/NAMICSandBox/trunk/ChangeTrackerExtra/ChangeTrackerVT/ ChangeTrackerVT] in NAMIC Sandbox) | ||
| − | * [http://svn.na-mic.org/NAMICSandBox/trunk/MRIBiasCorrectionFilter/ | + | * [http://svn.na-mic.org/NAMICSandBox/trunk/MRIBiasCorrectionFilter/ MRIBiasCorrectionFilter] module by Nicolas Rannou available in NAMIC SandBox, initial testing on rhesus data done |
* GWE set up on SPL Cluster for registration parameter exploration | * GWE set up on SPL Cluster for registration parameter exploration | ||
Revision as of 20:19, 17 June 2009
Home < Measuring Alcohol Stress Interaction
Key Investigators
- VT: Chris Wyatt, Vidya Rajagopalan
- BWH: Andrey Fedorov, Ron Kikinis, Nicolas Rannou, Sylvain Jaume
Objective
- To improve cortical segmentation of Vervet segmentation Results
- Use Change tracker module in Slicer to study hippocampal changes between subjects at two time points
Approach, Plan
- Improve rigid registration results by optimizing parameters
- Add bias correction to workflow to improve segmentation results
- Study hippocampal changes between subjects at two time points using Change Tracker
Progress
- ChangeTracker augmented with the capability to accept externally-defined segmentation (ChangeTrackerVT in NAMIC Sandbox)
- MRIBiasCorrectionFilter module by Nicolas Rannou available in NAMIC SandBox, initial testing on rhesus data done
- GWE set up on SPL Cluster for registration parameter exploration
References
- NA-MIC NCBC Collaboration: Measuring alcohol and stress interaction
- EM Segment project by Sylvain Jaume and Nicolas Rannou
- Tustison N., Gee J. "N4ITK: Nick's N3 ITK Implementation For MRI Bias Field Correction" InsightJournal, 2009 January - June, [1]
