Difference between revisions of "Project Week 25/DICOM Segmentation Support for Cornerstone and OHIF Viewer"

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Back to [[Project_Week_25#Projects|Projects List]]
 
Back to [[Project_Week_25#Projects|Projects List]]
 
  
 
==Key Investigators==
 
==Key Investigators==
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** SAKE viewer tool (http://sakeviewer.com/)
 
** SAKE viewer tool (http://sakeviewer.com/)
 
** Experiments with Segmentation read/write in javascript
 
** Experiments with Segmentation read/write in javascript
** Discussions and prototypes with Dana Farber
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** Discussions and prototypes with Dana-Farber Cancer Institute
 
* Try building an end-to-end proof of concept
 
* Try building an end-to-end proof of concept
 
** Read grayscale and segmentation
 
** Read grayscale and segmentation
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==Illustrations==
 
==Illustrations==
[[File:OHIF Study List.png]]
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[[image:OHIF Study List.png|800px]]
  
[[File:OHIF Viewer Screenshot.png]]
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[[image:OHIF Viewer Screenshot.png|800px]]
  
 
==Background and References==
 
==Background and References==
  
SIIM2017 Learning Lab introduction to Cornerstone / OHIF:
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SIIM2017 Learning Lab introduction to Cornerstone / OHIF
 
* Slides: https://www.dropbox.com/s/bg4mm7s9kek0708/SIIM2017%20-%20Build%20your%20own%20zero%20footprint%20web%20viewer.pptx?dl=1
 
* Slides: https://www.dropbox.com/s/bg4mm7s9kek0708/SIIM2017%20-%20Build%20your%20own%20zero%20footprint%20web%20viewer.pptx?dl=1
 
* Repository: https://github.com/chafey/byozfwv
 
* Repository: https://github.com/chafey/byozfwv
  
OHIF Community Forum Slides:
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OHIF Community Forum Slides
 
* https://docs.google.com/presentation/d/1iYZoU7v7KHSLHiKwH1_9_wweAkG7RGnyxrWeeHva4zQ/edit#slide=id.g17e0507313_1_46
 
* https://docs.google.com/presentation/d/1iYZoU7v7KHSLHiKwH1_9_wweAkG7RGnyxrWeeHva4zQ/edit#slide=id.g17e0507313_1_46
 
* https://docs.google.com/presentation/d/1K9Y6eP5DYTXoDlfwCZE6GkCUp83AK4_40YQS0dlzVBo/edit#slide=id.g17df770847_0_0
 
* https://docs.google.com/presentation/d/1K9Y6eP5DYTXoDlfwCZE6GkCUp83AK4_40YQS0dlzVBo/edit#slide=id.g17df770847_0_0
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* https://github.com/OHIF/Viewers
 
* https://github.com/OHIF/Viewers
  
Work thus far on segmentations / overlays in Cornerstone:
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Work thus far on segmentations / overlays in Cornerstone
 
 
 
* https://github.com/chafey/cornerstone/pull/68
 
* https://github.com/chafey/cornerstone/pull/68
 
* https://github.com/chafey/cornerstone/pull/109
 
* https://github.com/chafey/cornerstone/pull/109
 
* https://rawgit.com/swederik/cornerstone/composition/example/testSeg/index.html
 
* https://rawgit.com/swederik/cornerstone/composition/example/testSeg/index.html
 
* http://sakeviewer.com/
 
* http://sakeviewer.com/

Revision as of 13:48, 20 June 2017

Home < Project Week 25 < DICOM Segmentation Support for Cornerstone and OHIF Viewer


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Key Investigators

  • Erik Ziegler (Open Health Imaging Foundation, USA)
  • Steve Pieper (Isomics, Inc., USA)
  • Marco Nolden (German Cancer Research Center (DKFZ), Germany)
  • Tina Kapur (Brigham and Women's Hospital, Harvard Medical School, USA)

Project Description

Objective Approach and Plan Progress and Next Steps
  • Overall goal is to facilitate zero-footprint image annotation
    • Runs in browser
    • Fast and usable by clinicians
    • Interoperable (DICOM-based)
  • Cornerstone has great platform
    • Needs segmentation display
    • Needs suite of editing tools (plugin architecture)
    • Needs DICOM Segmentation object support
  • Review architectures and experiments so far
    • SAKE viewer tool (http://sakeviewer.com/)
    • Experiments with Segmentation read/write in javascript
    • Discussions and prototypes with Dana-Farber Cancer Institute
  • Try building an end-to-end proof of concept
    • Read grayscale and segmentation
    • Edit segmentation
    • Write out segmentation (store to server)
  • Discuss how to harden and integrate with production systems
  • What other work is needed

Illustrations

OHIF Study List.png

OHIF Viewer Screenshot.png

Background and References

SIIM2017 Learning Lab introduction to Cornerstone / OHIF

OHIF Community Forum Slides

Repositories

Work thus far on segmentations / overlays in Cornerstone