Difference between revisions of "Projects:RegistrationDocumentation:RegLibTable"

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|-
 
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| 1
 
| 1
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| [[Image:RegUC2_thumb_t0.png|50px|lleft|RegLib C01: Tumor change assessment|link=Projects:RegistrationDocumentation:RegLib_C01_BrainTumor]]  
+
| [[Image:RegUC2_thumb_t0.png|60px|lleft|RegLib C01: Tumor change assessment|link=Projects:RegistrationDocumentation:RegLib_C01_BrainTumor]]  
 
| brain
 
| brain
 
| glioblastoma
 
| glioblastoma
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|-
 
|-
 
| 2
 
| 2
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|[[Image:RLib02_SPGR.png|50px|lleft|RegLib C02: MS multispectral alignment|link=Projects:RegistrationDocumentation:RegLib_C02_MultipleSclerosis]]  
+
|[[Image:RLib02_SPGR.png|60px|lleft|RegLib C02: MS multispectral alignment|link=Projects:RegistrationDocumentation:RegLib_C02_MultipleSclerosis]]  
 
| brain
 
| brain
 
| multiple sclerosis
 
| multiple sclerosis
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|-
 
|-
 
| 3
 
| 3
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| [[Image:RegLib_C03_DTIVol_axial.png|50px|lleft|RegLib C03: DTI alignment|link=Projects:RegistrationDocumentation:RegLib_03_DWIToBaseline]]  
+
| [[Image:RegLib_C03_DTIVol_axial.png|60px|lleft|RegLib C03: DTI alignment|link=Projects:RegistrationDocumentation:RegLib_03_DWIToBaseline]]  
 
| brain
 
| brain
 
| tumor
 
| tumor
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| 4
 
| 4
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| [[Image:Reglib_C04_Thumb_PD1.jpg‎|50px|lleft|RegLib C04: MS Lesion baseline|link=Projects:RegistrationDocumentation:RegLib_04_MultipleSclerosis]]  
+
| [[Image:Reglib_C04_Thumb_PD1.jpg‎|60px|lleft|RegLib C04: MS Lesion baseline|link=Projects:RegistrationDocumentation:RegLib_04_MultipleSclerosis]]  
 
| Brain
 
| Brain
 
| multiple sclerosis
 
| multiple sclerosis
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|-
 
| 5
 
| 5
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| [[Image:RegLib C05 KneeMRI1.png|70px|lleft|RegLib 05: Knee MRI subject 1|link=Projects:RegistrationDocumentation:RegLib_05_KneeMRI]]
+
| [[Image:RegLib C05 KneeMRI1.png|60px|lleft|RegLib 05: Knee MRI subject 1|link=Projects:RegistrationDocumentation:RegLib_05_KneeMRI]]
 
| knee
 
| knee
 
| N/A
 
| N/A
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|-
 
|-
 
| 6
 
| 6
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| [[Image:RegLib C06 BreastMRIPostRx.png|70px|lleft|RegLib 06: Breast MRI|link=Projects:RegistrationDocumentation:RegLib_06_BreastMRI]]  
+
| [[Image:RegLib C06 BreastMRIPostRx.png|60px|lleft|RegLib 06: Breast MRI|link=Projects:RegistrationDocumentation:RegLib_06_BreastMRI]]  
 
| breast
 
| breast
 
| tumor
 
| tumor
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|-
 
|-
 
| 7
 
| 7
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| [[Image:RegLib C07 Prostate1.png|70px|lleft|RegLib 07: Prostate baseline|link=Projects:RegistrationDocumentation:RegLib_07_ProstateMRII&action=edit&redlink=1]]
+
| [[Image:RegLib C07 Prostate1.png|60px|lleft|RegLib 07: Prostate baseline|link=Projects:RegistrationDocumentation:RegLib_07_ProstateMRII&action=edit&redlink=1]]
 
| prostate
 
| prostate
 
| N/A
 
| N/A
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|-
 
|-
 
| 8
 
| 8
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| [[Image:RegLib_C08_WholeBodyPET-CT1.png|70px|lleft|RegLib C08: PET-CT1]]
+
| [[Image:RegLib_C08_WholeBodyPET-CT1.png|60px|lleft|RegLib C08: PET-CT1|link=Projects:RegistrationDocumentation:RegLib_08_WholeBodyPET-CT]]
−
| organ
+
| abdominal, thoracic
 
| path
 
| path
−
| DOF
+
| 12 + nonrigid
−
| toolbox
+
| [http://www.slicer.org/slicerWiki/index.php/Modules:AffineRegistration-Documentation-3.6 Fast Affine] + [http://www.slicer.org/slicerWiki/index.php/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline]
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| modality
+
| PET-CT
−
| description
+
| follow-up change assessment from combined whole-body PET-CT pair
 
|-
 
|-
 
| 9
 
| 9
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| [[Image:RegLib C09 fMRI1.png|70px|lleft|RegLib 09: T1 SPGR|link=Projects:RegistrationDocumentation:RegLib_09_fMRI]]
+
| [[Image:RegLib C09 fMRI1.png|70px|lleft|RegLib 09: T1 SPGR|link=Projects:RegistrationDocumentation:RegLib_09_fMRI|link=Projects:RegistrationDocumentation:RegLib_09_fMRI]]
−
| organ
+
| brain
−
| path
+
| infarct
−
| DOF
+
| 12 + nonrigid
−
| toolbox
+
| [http://www.slicer.org/slicerWiki/index.php/Modules:AffineRegistration-Documentation-3.6 Fast Affine] + [http://www.slicer.org/slicerWiki/index.php/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline]
−
| modality
+
| fMRI
−
| description
+
| align fMRI with structural reference (T1)
 
|-
 
|-
 
| 10
 
| 10
−
| thumb
+
| [[Image:RegLib_C10_EMAtlas2.png|60px|lleft|Probabilistic Tissue Atlas|link=Projects:RegistrationDocumentation:RegLib_10_AtlasBasedSegmentation]]
−
| organ
+
| brain
−
| path
+
| N/A
−
| DOF
+
| infarct
−
| toolbox
+
| 12 + nonrigid
−
| modality
+
| [http://www.slicer.org/slicerWiki/index.php/Modules:AffineRegistration-Documentation-3.6 Fast Affine] + [http://www.slicer.org/slicerWiki/index.php/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline]
−
| description
+
| MRI
 +
| align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation
 
|-
 
|-
 
| 11
 
| 11
−
| thumb
+
| [[Image:RegLib_C11_AtlasMerge_1.png|60px|left|link=Projects:RegistrationDocumentation:RegLib_11_AtlasThalamicLabelMerge]]
−
| organ
+
| brain
−
| path
+
| none
−
| DOF
+
| 12
−
| toolbox
+
| http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]
−
| modality
+
| MRI / labelmaps
−
| description
+
| co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps
 
|}
 
|}

Revision as of 20:43, 27 May 2010

Home < Projects:RegistrationDocumentation:RegLibTable

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this page is under active development and is being updated regularly. Comments welcome to the slicer-users mailing list

Registration Library Cases : Sortable Table

id thumbnail structure pathology DOF toolbox modality description
1 RegLib C01: Tumor change assessment brain glioblastoma 12 Expert Automated MRI T1 change detection, tumor follow-up
2 RegLib C02: MS multispectral alignment brain multiple sclerosis 12 Expert Automated MRI T2 FLAIR
3 RegLib C03: DTI alignment brain tumor nonrigid Fast Nonrigid BSpline DTI align DTI volume with structural reference scan (T2)
4 RegLib C04: MS Lesion baseline Brain multiple sclerosis 12 Expert Automated MRI PD/T2 T1Gd align 2 sets of multi-contrast MRI for lesion change assessment
5 RegLib 05: Knee MRI subject 1 knee N/A 12 + nonrigid Surface Registration MRI inter-subject alignment of knee MRI for atlas-based segmentation
6 RegLib 06: Breast MRI breast tumor 6 + nonrigid Manual + Fast Nonrigid BSpline MRI post-intervention assessment of breast cancer
7 RegLib 07: Prostate baseline prostate N/A 12 + nonrigid Fast Affine + Fast Nonrigid BSpline MRI change-assessment in post-intervention MRI follow-up
8 RegLib C08: PET-CT1 abdominal, thoracic path 12 + nonrigid Fast Affine + Fast Nonrigid BSpline PET-CT follow-up change assessment from combined whole-body PET-CT pair
9 RegLib 09: T1 SPGR brain infarct 12 + nonrigid Fast Affine + Fast Nonrigid BSpline fMRI align fMRI with structural reference (T1)
10 Probabilistic Tissue Atlas brain N/A infarct 12 + nonrigid Fast Affine + Fast Nonrigid BSpline MRI align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation
11
RegLib C11 AtlasMerge 1.png
 brain none 12 http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] MRI / labelmaps co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps
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