Difference between revisions of "ProstateNavigation workflow"

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* Try to use existing segmentation modules like [http://www.slicer.org/slicerWiki/index.php/Modules:RobustStatisticsSeg-Documentation-3.6 Robust Statistics Segmenter] or [https://www.youtube.com/watch?v=1mYNwJbE7dQ VolumeClip] for quicker prostate segmentation
 
* Try to use existing segmentation modules like [http://www.slicer.org/slicerWiki/index.php/Modules:RobustStatisticsSeg-Documentation-3.6 Robust Statistics Segmenter] or [https://www.youtube.com/watch?v=1mYNwJbE7dQ VolumeClip] for quicker prostate segmentation
 
* Evaluate segmentation results by comparing to manual segmentation of trained radiologists (DICE-Coefficient)
 
* Evaluate segmentation results by comparing to manual segmentation of trained radiologists (DICE-Coefficient)
* Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4
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* Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using Fiducial Registration Error (FRE)
 
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<div style="width: 27%; float: left; padding-right: 3%;">
 
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Revision as of 20:18, 5 January 2015

Home < ProstateNavigation workflow

Key Investigators

Peter Behringer and Andrey Fedorov

Project Description

Objective

  • Design an easy to use GUI for ProstateNavigation (Planning, Registration, Navigation)
  • Get Ideas how prostate segmentation can be done quicker, fully automatic in best case
  • Validate different pre-op to intra-op registration approaches

Approach, Plan

  • Create mockup GUI
  • Try to use existing segmentation modules like Robust Statistics Segmenter or VolumeClip for quicker prostate segmentation
  • Evaluate segmentation results by comparing to manual segmentation of trained radiologists (DICE-Coefficient)
  • Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using Fiducial Registration Error (FRE)

Progress

  • We created a manual describing the workflow steps in the current stage
  • Created requirements list containing the core functions of the workflow