User contributions
From NAMIC Wiki
- 23:12, 27 January 2010 diff hist +3 Smoothing multi-label brain segmentations →Prepare smoothed label maps for separated labels current
- 23:12, 27 January 2010 diff hist -3 Smoothing multi-label brain segmentations →Prepare smoothed label maps for separated labels
- 22:58, 27 January 2010 diff hist +2 Smoothing multi-label brain segmentations →Re-combine smoothed label maps
- 22:58, 27 January 2010 diff hist +135 Smoothing multi-label brain segmentations
- 22:55, 27 January 2010 diff hist +193 Smoothing multi-label brain segmentations →Prepare smoothed label maps for separated labels
- 22:54, 27 January 2010 diff hist +482 Smoothing multi-label brain segmentations →Prepare smoothed label maps for separated labels
- 22:46, 27 January 2010 diff hist +24 Smoothing multi-label brain segmentations →Prepare smoothed label maps for separated labels
- 22:45, 27 January 2010 diff hist +1 Smoothing multi-label brain segmentations →Prepare smoothed label maps for separated labels
- 22:45, 27 January 2010 diff hist +4 Smoothing multi-label brain segmentations
- 22:45, 27 January 2010 diff hist +557 Smoothing multi-label brain segmentations
- 22:38, 27 January 2010 diff hist -41 Smoothing multi-label brain segmentations
- 22:37, 27 January 2010 diff hist 0 Smoothing multi-label brain segmentations
- 22:36, 27 January 2010 diff hist +2 Smoothing multi-label brain segmentations
- 22:36, 27 January 2010 diff hist +71 Smoothing multi-label brain segmentations
- 22:35, 27 January 2010 diff hist +40 Smoothing multi-label brain segmentations
- 22:33, 27 January 2010 diff hist -18 Smoothing multi-label brain segmentations
- 22:33, 27 January 2010 diff hist +315 Smoothing multi-label brain segmentations
- 22:31, 27 January 2010 diff hist -183 Smoothing multi-label brain segmentations
- 22:28, 27 January 2010 diff hist +761 N Smoothing multi-label brain segmentations Created page with '== smoothing workflow == # Deformable registration of the atlas to the subject to be segmented # Segmentation using one of the approaches below For State 1 scans, the workflow …'
- 22:27, 27 January 2010 diff hist +48 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction →Documentation
- 18:45, 5 January 2010 diff hist +6 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments current
- 17:53, 5 January 2010 diff hist +152 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 17:34, 5 January 2010 diff hist +61 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 17:32, 5 January 2010 diff hist +54 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 14:30, 12 October 2009 diff hist -4 Proposed work pipeline current
- 14:30, 12 October 2009 diff hist -8 Proposed work pipeline
- 14:29, 12 October 2009 diff hist -1 Proposed work pipeline
- 14:29, 12 October 2009 diff hist -8 Proposed work pipeline
- 14:28, 12 October 2009 diff hist +739 N Proposed work pipeline Created page with '# Ginger: produce ICC mask for chosen template: Gucci #Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline #Ginger: compute average of the ali…'
- 14:20, 12 October 2009 diff hist +29 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction →Documentation
- 02:27, 9 October 2009 diff hist +486 N Oct 08 2009 meeting: schedule for Oct 9 Created page with 'With Ron: * what caused the hole in Valentino data; * check the quality of N3 bias correction; * learn how to manually segment sub-cortical structures. With Sandy: * check t…'
- 02:19, 9 October 2009 diff hist +73 Events:VT-NAMIC-NCBC-Collaboration-meeting-2009 →Progress
- 02:17, 9 October 2009 diff hist -1 October 08 2009 Meeting: VT-NAMIC Revised atlas construction workflow
- 02:17, 9 October 2009 diff hist +183 October 08 2009 Meeting: VT-NAMIC Revised atlas construction workflow
- 02:14, 9 October 2009 diff hist +24 October 08 2009 Meeting: VT-NAMIC Revised atlas construction workflow
- 03:38, 8 October 2009 diff hist -29 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:36, 8 October 2009 diff hist +2 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:36, 8 October 2009 diff hist +521 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:28, 8 October 2009 diff hist +312 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:23, 8 October 2009 diff hist -1 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:23, 8 October 2009 diff hist +161 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:19, 8 October 2009 diff hist +1 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:18, 8 October 2009 diff hist +6 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:16, 8 October 2009 diff hist +87 October 07 2009 Meeting: VT-NAMIC Data load protocol and comments
- 03:13, 8 October 2009 diff hist +147 N October 07 2009 Meeting: VT-NAMIC Data load protocol and comments Created page with '{| class="wikitable" style="text-align:center; width:800px; height:200px" border="1" |- ! subject !! T1 data source !! notes |- ! calvin | || |}'
- 20:59, 5 October 2009 diff hist 0 Initial atlas construction workflow
- 20:44, 5 October 2009 diff hist -224 Initial atlas construction workflow
- 20:35, 5 October 2009 diff hist +1 Initial atlas construction workflow
- 20:34, 5 October 2009 diff hist -339 Initial atlas construction workflow
- 20:24, 5 October 2009 diff hist -235 Initial atlas construction workflow
- 19:16, 5 October 2009 diff hist -160 Initial atlas construction workflow
- 19:15, 5 October 2009 diff hist +23 Initial atlas construction workflow
- 19:12, 5 October 2009 diff hist +3,653 N Initial atlas construction workflow Created page with '== Objective == Develop an atlas construction workflow for vervet segmentation, which will maximally (completely) consist of the NA-MIC tools. Learn from the previous experience…'
- 19:12, 5 October 2009 diff hist +42 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction →Documentation
- 19:39, 16 September 2009 diff hist +78 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots current
- 19:37, 16 September 2009 diff hist 0 N File:Slicer3(4)UpdateSs3.png current
- 19:37, 16 September 2009 diff hist 0 N File:Slicer3(4)UpdateSs2.png current
- 19:37, 16 September 2009 diff hist 0 N File:Slicer3(4)UpdateSs1.png current
- 19:36, 16 September 2009 diff hist 0 N File:Slicer3(4)Ss3.png current
- 19:36, 16 September 2009 diff hist 0 N File:Slicer3(4)Ss2.png current
- 19:36, 16 September 2009 diff hist 0 N File:Slicer3(4)Ss1.png current
- 19:36, 16 September 2009 diff hist 0 File:Slicer2Screenshot3.png uploaded a new version of "File:Slicer2Screenshot3.png" current
- 19:36, 16 September 2009 diff hist 0 File:Slicer2Screenshot2.png uploaded a new version of "File:Slicer2Screenshot2.png" current
- 19:35, 16 September 2009 diff hist 0 File:Slicer2Screenshot1.png uploaded a new version of "File:Slicer2Screenshot1.png" current
- 19:33, 16 September 2009 diff hist +238 On the performance of Slicer 2 and Slicer3 EM segmentation modules
- 20:32, 10 September 2009 diff hist +24 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:31, 10 September 2009 diff hist -3 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:30, 10 September 2009 diff hist +13 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:29, 10 September 2009 diff hist -18 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:29, 10 September 2009 diff hist +2 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:28, 10 September 2009 diff hist +2 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:28, 10 September 2009 diff hist +3 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:27, 10 September 2009 diff hist +1 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:27, 10 September 2009 diff hist +1 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:26, 10 September 2009 diff hist +12 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:26, 10 September 2009 diff hist -30 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:25, 10 September 2009 diff hist 0 File:Slicer3Screenshot3.png uploaded a new version of "File:Slicer3Screenshot3.png" current
- 20:25, 10 September 2009 diff hist 0 File:Slicer3Screenshot2.png uploaded a new version of "File:Slicer3Screenshot2.png" current
- 20:25, 10 September 2009 diff hist 0 File:Slicer3Screenshot1.png uploaded a new version of "File:Slicer3Screenshot1.png" current
- 20:25, 10 September 2009 diff hist 0 File:Slicer2Screenshot3.png uploaded a new version of "File:Slicer2Screenshot3.png"
- 20:24, 10 September 2009 diff hist 0 File:Slicer2Screenshot2.png uploaded a new version of "File:Slicer2Screenshot2.png"
- 20:24, 10 September 2009 diff hist 0 File:Slicer2Screenshot1.png uploaded a new version of "File:Slicer2Screenshot1.png"
- 20:23, 10 September 2009 diff hist 0 On the performance of Slicer 2 and Slicer3 EM segmentation modules
- 20:23, 10 September 2009 diff hist +249 On the performance of Slicer 2 and Slicer3 EM segmentation modules
- 21:09, 9 September 2009 diff hist 0 On the performance of Slicer 2 and Slicer3 EM segmentation modules
- 21:05, 9 September 2009 diff hist +1 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Abstract
- 21:03, 9 September 2009 diff hist 0 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 21:03, 9 September 2009 diff hist +172 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 21:02, 9 September 2009 diff hist 0 N File:Slicer2Screenshot3.png
- 21:02, 9 September 2009 diff hist 0 N File:Slicer2Screenshot2.png
- 21:02, 9 September 2009 diff hist 0 N File:Slicer2Screenshot1.png
- 21:02, 9 September 2009 diff hist +15 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 21:00, 9 September 2009 diff hist +61 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:58, 9 September 2009 diff hist +32 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:57, 9 September 2009 diff hist -113 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:56, 9 September 2009 diff hist -85 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:55, 9 September 2009 diff hist +2 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:54, 9 September 2009 diff hist 0 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:54, 9 September 2009 diff hist +16 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation results as in screen shots
- 20:52, 9 September 2009 diff hist +43 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Segmentation Results
- 20:51, 9 September 2009 diff hist 0 N File:Slicer3Screenshot3.png
- 20:51, 9 September 2009 diff hist 0 N File:Slicer3Screenshot2.png
- 20:51, 9 September 2009 diff hist 0 N File:Slicer3Screenshot1.png
- 20:50, 9 September 2009 diff hist 0 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Experiment description
- 20:50, 9 September 2009 diff hist -6 On the performance of Slicer 2 and Slicer3 EM segmentation modules →Experiment description
- 20:49, 9 September 2009 diff hist +1,669 N On the performance of Slicer 2 and Slicer3 EM segmentation modules Created page with '==Abstract== This page presents an experiment comparing the performance of Slicer 2.6 and Slicer 3.5 EM segmentation modules on no-human data. Sept, 09. === Experiment descripti…'
- 20:46, 9 September 2009 diff hist +73 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction →Documentation
- 15:41, 4 September 2009 diff hist +47 Atlas-to-subject registration with FSL and Diffeomorphic Demons, for EM segmentation. current
- 18:50, 26 August 2009 diff hist +173 Atlas-to-subject registration with FSL and Diffeomorphic Demons, for EM segmentation.
- 18:43, 26 August 2009 diff hist 0 Atlas-to-subject registration with FSL and Diffeomorphic Demons, for EM segmentation.
- 18:43, 26 August 2009 diff hist +290 Atlas-to-subject registration with FSL and Diffeomorphic Demons, for EM segmentation.
- 18:05, 24 August 2009 diff hist +2,641 N Atlas-to-subject registration with FSL and Diffeomorphic Demons, for EM segmentation. Created page with '==Abstract== This page describes the FSL-based EM segmentation. Page created by Aug, 09. === Segmentation pipeline === # Atlas construction phase: ## Chose one subject form the …'
- 18:04, 24 August 2009 diff hist +12 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction
- 22:03, 21 August 2009 diff hist -2 FSL-based segmentation pipeline →Segmentation Results current
- 22:02, 21 August 2009 diff hist +74 FSL-based segmentation pipeline →Segmentation Results
- 22:02, 21 August 2009 diff hist 0 N File:Tommy.png current
- 22:01, 21 August 2009 diff hist 0 N File:Tommy1.png current
- 22:01, 21 August 2009 diff hist 0 N File:Oscar.png current
- 22:01, 21 August 2009 diff hist 0 FSL-based segmentation pipeline →Segmentation Results
- 22:00, 21 August 2009 diff hist -40 FSL-based segmentation pipeline →Segmentation Results
- 22:00, 21 August 2009 diff hist +68 FSL-based segmentation pipeline →Segmentation Results
- 21:59, 21 August 2009 diff hist +9 FSL-based segmentation pipeline
- 21:58, 21 August 2009 diff hist 0 N File:Oscar1.png current
- 21:56, 21 August 2009 diff hist +457 FSL-based segmentation pipeline
- 21:17, 21 August 2009 diff hist +25 FSL-based segmentation pipeline
- 21:11, 21 August 2009 diff hist -60 FSL-based segmentation pipeline
- 21:10, 21 August 2009 diff hist +22 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction
- 21:09, 21 August 2009 diff hist +2,110 N FSL-based segmentation pipeline Created page with ' EM segmentation pipeline Aug 10, 09 Atlas construction phase: Chose one subject form the dataset a…'
- 21:08, 21 August 2009 diff hist -54 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction
- 17:25, 21 August 2009 diff hist -1 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction
- 17:25, 21 August 2009 diff hist +133 NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction
- 15:59, 21 August 2009 diff hist 0 N File:EMpipeline.pdf current