Difference between revisions of "UNC ARCTIC Tutorial"

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==Overview==
 
==Overview==
  
Following thoss tutorials, you will be able to perform an individual analysis of regional cortical thickness.
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Following those tutorials, you will be able to perform an individual analysis of regional cortical thickness.
 
In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes.  
 
In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes.  
 
And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis step by step.
 
And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis step by step.
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Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline
 
Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline
  
==Tutorial==
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==Tutorials==
  
• [http://www.nitrc.org/projects/arctic/ ARCTIC tutorial (end-to-end  Slicer3 module)‏]
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• [[Media:ARCTIC-Slicer3-Tutorial.ppt|ARCTIC tutorial (end-to-end  Slicer3 module)‏]]
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• [[Media:UNC_Modules-Slicer3-Tutorial.ppt|UNC Modules tutorial (UNC modules to perform regional cortical thickness analysis)‏]]
  
 
==Software==
 
==Software==

Revision as of 00:53, 7 January 2009

Home < UNC ARCTIC Tutorial

ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial

Overview

Following those tutorials, you will be able to perform an individual analysis of regional cortical thickness. In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes. And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis step by step.


Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline

Tutorials

ARCTIC tutorial (end-to-end Slicer3 module)‏

UNC Modules tutorial (UNC modules to perform regional cortical thickness analysis)‏

Software

• Slicer3 http://www.slicer.org/pages/Downloads

• BatchMake‏ http://www.batchmake.org/batchmake/resources/software.html

Tutorial materials

BatchMake wrapper (ARCTIC_BatchMake_Wrapper_1.0)‏

Tutorial dataset(ARCTIC_Tutorial_example_1.0)

External modules (ARCTIC_Executables_1.0)

‏Pediatric atlas (UNC_Pediatric_Brain_Atlas)

People

Cedric Mathieu

Clement Vachet

Martin Styner

Heather Cody Hazlett