Difference between revisions of "User:Davisb"
From NAMIC Wiki
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==Rule Based Segmentation== | ==Rule Based Segmentation== | ||
| − | Status summary: fixed wrapper, | + | Status summary: fixed wrapper, added mask code, currently debugging mask code |
*build initial copy | *build initial copy | ||
| Line 23: | Line 23: | ||
*Run tests | *Run tests | ||
*itk tests succeed | *itk tests succeed | ||
| − | *vtk | + | *vtk test without mask succeeds |
| + | *vtk test with mask does not succeed | ||
Problems: | Problems: | ||
| Line 32: | Line 33: | ||
**vtk test | **vtk test | ||
*[now working] vtk test does not work---subtle error in itk code | *[now working] vtk test does not work---subtle error in itk code | ||
| − | *[ | + | *[done] need to add mask |
*[the dimensios are itk=3, vtk=3, made itk test 3D also] why does vtk test give warning from diffusion filter, but itk test does not? | *[the dimensios are itk=3, vtk=3, made itk test 3D also] why does vtk test give warning from diffusion filter, but itk test does not? | ||
| + | *[pending]results from vtk test with mask do not work | ||
| + | *need to check everything in | ||
===VTK wrapper does not work=== | ===VTK wrapper does not work=== | ||
*use VTKITK source from vtkITK directory, not seperate copy of files | *use VTKITK source from vtkITK directory, not seperate copy of files | ||
Revision as of 19:39, 4 May 2007
Current Projects
Rule Based Segmentation
Status summary: fixed wrapper, added mask code, currently debugging mask code
- build initial copy
- get cvs copy of slicer2
- Scripts/genlib.tcl
- Scripts/cmaker.tcl
- get svn copy of NAMICSandbox
- create a link to the RuleBasedSegmentation module within slicer2
- get cvs copy of slicer2
cd slicer2/Modules ln -s NAMICSandbox/RuleBasedSegmentation/vtkRuleBasedSegmentation vtkRuleBasedSegmentation
- compile slicer2 with RuleBasedSegmentation module
- Scripts/genlib.tcl
- compile slicer2 with RuleBasedSegmentation module
- add tests
- test source is already present in the cxx directory
- update CMakeListsLocal.txt in cxx directory---tests are built in module directory
- added a temporary script RunsTests.sh in the Tests directory to run the itk and vtk tests with and without masks
- copied png images to the Tests directory
- "gold standard" images were incorrect; have been rescaled from [0,1] to [0,255]; so much for gold standard ;)
- Run tests
- itk tests succeed
- vtk test without mask succeeds
- vtk test with mask does not succeed
Problems:
- [fixed]Build fails---updated name in cmakelists
- [temporary tests added] need to add tests
- itk test
- vtk test
- [now working] vtk test does not work---subtle error in itk code
- [done] need to add mask
- [the dimensios are itk=3, vtk=3, made itk test 3D also] why does vtk test give warning from diffusion filter, but itk test does not?
- [pending]results from vtk test with mask do not work
- need to check everything in
VTK wrapper does not work
- use VTKITK source from vtkITK directory, not seperate copy of files
