User:Davisb

From NAMIC Wiki
Jump to: navigation, search

Current Projects

Rule Based Segmentation

Status summary: fixed wrapper, now adding mask code

  • build initial copy
    • get cvs copy of slicer2
      • Scripts/genlib.tcl
      • Scripts/cmaker.tcl
    • get svn copy of NAMICSandbox
    • create a link to the RuleBasedSegmentation module within slicer2
cd slicer2/Modules
ln -s NAMICSandbox/RuleBasedSegmentation/vtkRuleBasedSegmentation vtkRuleBasedSegmentation
    • compile slicer2 with RuleBasedSegmentation module
      • Scripts/genlib.tcl
  • add tests
    • test source is already present in the cxx directory
    • update CMakeListsLocal.txt in cxx directory---tests are built in module directory
    • added a temporary script RunsTests.sh in the Tests directory to run the itk and vtk tests with and without masks
    • copied png images to the Tests directory
    • "gold standard" images were incorrect; have been rescaled from [0,1] to [0,255]; so much for gold standard ;)
  • Run tests
  • itk tests succeed
  • vtk tests do not succeed---there is a problem with the wrapper

Problems:

  • [fixed]Build fails---updated name in cmakelists
  • [temporary tests added] need to add tests
    • itk test
    • vtk test
  • [now working] vtk test does not work---subtle error in itk code
  • [pending] need to add mask
  • [the dimensios are itk=3, vtk=3, made itk test 3D also] why does vtk test give warning from diffusion filter, but itk test does not?

VTK wrapper does not work

  • use VTKITK source from vtkITK directory, not seperate copy of files