2012 Summer Project Week:ElastixIntegration

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Key Investigators

  • Erasmus Medical Center: Stefan Klein
  • BWH: Sonia Pujol


Elastix is an open-source package for image registration developed by Stefan Klein and Marcus Staring. The objective is to interface Elastix with Slicer4. References: S. Klein, M. Staring, K. Murphy, M.A. Viergever, J.P.W. Pluim, "elastix: a toolbox for intensity based medical image registration," IEEE Transactions on Medical Imaging, vol. 29, no. 1, pp. 196 - 205, January 2010.

Approach, Plan

The elastix executable will be wrapped in Slicer as a Command Line Plug-in. Since Elastix is a flexible program with many parameters, a number of presets will be defined to simplify usage.


Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. ITK Module
  2. Slicer Module -
    1. Built-in -
    2. Extension -- commandline YES
    3. Extension -- loadable
  3. Other (Please specify)