Difference between revisions of "2013 Project Week:WebbasedAnatomicalTeachingFrameworkSummer2013"

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<h3>Objective</h3>
 
<h3>Objective</h3>
 
* Over the last several years, an [[CTSC:ARRA_supplement | infrastructure has been developed to integrate health records and PACS image archives]] to support research on large collections of data collected during delivery of healthcare (as contrasted with data collected as part of clinical trials). This resulted in the availability of [http://www.mi2b2.org the mi2b2 system].  An application enabled by this technology is supported by an [http://projectreporter.nih.gov/project_info_description.cfm?aid=8272742&icde=13552329&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC R01 to use clinical scans of children aged zero to six years old to build a teaching atlas].
 
* Over the last several years, an [[CTSC:ARRA_supplement | infrastructure has been developed to integrate health records and PACS image archives]] to support research on large collections of data collected during delivery of healthcare (as contrasted with data collected as part of clinical trials). This resulted in the availability of [http://www.mi2b2.org the mi2b2 system].  An application enabled by this technology is supported by an [http://projectreporter.nih.gov/project_info_description.cfm?aid=8272742&icde=13552329&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC R01 to use clinical scans of children aged zero to six years old to build a teaching atlas].
* One goal of the [http://www.mi2b2.org mi2b2] collaborative effort is to create a web-based teaching tool for fetal and neonatal anatomy as well as a browser for quantified information. A basic prototype has been created: [http://fnndsc.github.io/babybrain/]. The purpose of this project is to construct a 4D MRI dataset as a concatenation of multiple 3D MRI datasets (pediatric MRI scans at different stages of development), and to develop the functionality within [[https://github.com/xtk/X#readme|XTK]] to visualize and navigate this 4D dataset in a web browser.
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* One goal of the [http://www.mi2b2.org mi2b2] collaborative effort is to create a web-based teaching tool for fetal and neonatal anatomy as well as a browser for quantified information. A basic prototype has been created: [http://fnndsc.github.io/babybrain/ http://fnndsc.github.io/babybrain/]. The purpose of this project is to construct a 4D MRI dataset as a concatenation of multiple 3D MRI datasets (pediatric MRI scans at different stages of development), and to develop the functionality within [https://github.com/xtk/X#readme XTK] to visualize and navigate this 4D dataset in a web browser.
 
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Revision as of 18:58, 11 June 2013

Home < 2013 Project Week:WebbasedAnatomicalTeachingFrameworkSummer2013

Key Investigators

  • Daniel Haehn, Rudolph Pienaar, Ellen Grant (Boston Children's Hospital)
  • Steve Pieper (Isomics Inc.)
  • Randy Gollub, Lilla Zollei, Nathaniel Reynolds (MGH)

Project Description

Objective

Approach, Plan

We propose the following steps to create a high-level didactic content creation tool.

  • Enable switching between different testing scenarios (fetal brains, liver etc.)
  • Start with the existing Liver tutorial dataset and slides from the NA-MIC training core which includes a limited number of questions and answers
  • Load a visual scene linked to a question catalog from a defined file format (XML?)
  • The visualization and the questions are linked so answers can be provided in a fully interactive fashion (picking of a 3D mesh.. etc.)
  • Track user-specified answers and provide statistics after testing mode
  • Use 3D Slicer to generate content for training and testing
  • Prototype will be built on top of existing visualization infrastructure (XTK and web-based fetal atlas tool)
  • We envision a system somewhat like existing online quiz systems ([1], [2], [3], [4]) but with interactive 3D content drawn from the clinical use cases.
  • May use a helper library like SlickQuiz [5]

Progress

Draft Development Plans

Phase I: Developer Mockups

During the first half of 2013:

  • Hand-coded (html, javascript) mockups using to create content from existing content
    • Liver tutorial from Sonia
    • Fetal brain atlas
  • Identify best practices and experiment with different Question and Answer modes
  • Identify best practices and experiment with user interaction
  • Getting feedback on mi2b2 team and refining the mockups

Phase II: Limited Beta

During second half of 2013:

  • Identify first set of training content suitable for wider trial
  • Set up a site to host training materials
  • Open site to radiology trainees and gather feedback
  • Integrate infant brain atlas data as it becomes available

Phase III: Authoring Tools

During 2014:

  • Develop system for clinician-educators to easily create content
    • Define images, models, annotations, atlases to display
    • Define didactic material
    • Export content to hosting site
  • Leverage tools like Scene Views and WebGL Export from Slicer