Difference between revisions of "2008 Winter Project Week Tractography"
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+ | '''Link to [[ProjectWeek200706:ContrastingTractographyMeasures|DTI Validation Project Management Page]]''' | ||
+ | |||
== Tractography Validation Beadeker == | == Tractography Validation Beadeker == | ||
− | **9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting [http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures tractography | + | **9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting [http://www.na-mic.org/Wiki/index.php/Projects/Diffusion/Contrasting_Tractography_Measures | Link to tractography algorithms] |
− | **9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update | + | **9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update [[Media:NA-MIC.2008.AHM.mBIRN.ppt |Morphometry BIRN DTI calibration]] |
− | **9:25am: Randy Gollub, MIND Reliability dataset goals | + | **9:25am: Randy Gollub, MIND Reliability dataset goals [[Media:NA-MIC.2008.AHM.MINDintro.ppt |Impact of using MIND data for this project]] |
== Algorithm specific presentations == | == Algorithm specific presentations == | ||
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**9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding | **9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding | ||
**9:45 Sylvain Gouttard (Utah) FiberViewer | **9:45 Sylvain Gouttard (Utah) FiberViewer | ||
− | **9:55 | + | **9:55 Casey Goodlett (Utah) DTI Atlas |
− | **10:05 John Melonakos (Georgia Tech) [[media: | + | **10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation ([[media:AHM2008TractographyConferenceGeorgiaTech.ppt|slides]]) |
− | **10:15 | + | **10:15 Tri Ngo (MIT/BWH) Stochastic Tractography ([[media:STpresentationpack.zip|slides]]) |
− | **10:25 | + | **10:25 Vince Magnotta (UIowa) GTract |
'''10:35am: Coffee break''' | '''10:35am: Coffee break''' | ||
− | **11:00 | + | **11:00 Tom Fletcher (Utah) Volumetric Connectivity ([[media:VolumetricPathwayResults_NAMIC_AHM2008.ppt|slides]]) |
**11:10 Sonia Pujol (BWH) Cross algorithm summary statistics | **11:10 Sonia Pujol (BWH) Cross algorithm summary statistics | ||
== Discussion, future planning == | == Discussion, future planning == | ||
− | **11:25 | + | **11:25 CF Westin to kick-off discussion of Tractography results with summarizing ideas. [[2008_Winter_Project_Week_Tractography_Meeting_Notes|Meeting Notes]] |
'''12:00pm: Lunch''' | '''12:00pm: Lunch''' | ||
− | **1:00- 1: | + | **1:00- 1:20pm Presentation of current status of Slicer 3 DTI infrastructure (Alex Yarmarkovich)[http://www.na-mic.org/Wiki/index.php/Slicer3:DTMRI Slicer3 DTI status] |
+ | **1:20-1:30pm Dan Marcus to gather requirements to post this dataset for consideration of whether this is an XNATophilic project | ||
**1:30- 3:00pm Continue discussion of Tractography results with focus on: | **1:30- 3:00pm Continue discussion of Tractography results with focus on: | ||
***Data formats and coordinate system requirements/guidelines/recommendations | ***Data formats and coordinate system requirements/guidelines/recommendations | ||
Line 32: | Line 35: | ||
***Outcome metrics and how to best frame scientific questions for this project, steps towards manuscript preparation, milestones for spring 2008 and for Programming Week in June | ***Outcome metrics and how to best frame scientific questions for this project, steps towards manuscript preparation, milestones for spring 2008 and for Programming Week in June | ||
'''3pm: coffee break''' | '''3pm: coffee break''' | ||
− | + | *3-4PM Batchmake break-out session | |
**4:00pm Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk). | **4:00pm Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk). | ||
***Identify and agree upon essential processing steps (pipeline) necessary for clinical DTI studies | ***Identify and agree upon essential processing steps (pipeline) necessary for clinical DTI studies | ||
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***Integrate with other on-going efforts | ***Integrate with other on-going efforts | ||
− | + | == Meeting Notes == | |
+ | Notes of Tractography Meeting Jan 9, 2008: [[2008_Winter_Project_Week_Tractography_Meeting_Notes| Meeting Notes]] | ||
Back to [[AHM_2008]], [[Events]] | Back to [[AHM_2008]], [[Events]] |
Latest revision as of 15:08, 11 February 2008
Home < 2008 Winter Project Week TractographyLink to DTI Validation Project Management Page
Contents
Tractography Validation Beadeker
- 9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting | Link to tractography algorithms
- 9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update Morphometry BIRN DTI calibration
- 9:25am: Randy Gollub, MIND Reliability dataset goals Impact of using MIND data for this project
Algorithm specific presentations
- 9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
- 9:45 Sylvain Gouttard (Utah) FiberViewer
- 9:55 Casey Goodlett (Utah) DTI Atlas
- 10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation (slides)
- 10:15 Tri Ngo (MIT/BWH) Stochastic Tractography (slides)
- 10:25 Vince Magnotta (UIowa) GTract
10:35am: Coffee break
- 11:00 Tom Fletcher (Utah) Volumetric Connectivity (slides)
- 11:10 Sonia Pujol (BWH) Cross algorithm summary statistics
Discussion, future planning
- 11:25 CF Westin to kick-off discussion of Tractography results with summarizing ideas. Meeting Notes
12:00pm: Lunch
- 1:00- 1:20pm Presentation of current status of Slicer 3 DTI infrastructure (Alex Yarmarkovich)Slicer3 DTI status
- 1:20-1:30pm Dan Marcus to gather requirements to post this dataset for consideration of whether this is an XNATophilic project
- 1:30- 3:00pm Continue discussion of Tractography results with focus on:
- Data formats and coordinate system requirements/guidelines/recommendations
- Quality control methods and implementation
- ROIs: what works, what doesn't, what to do?
- Registration &/or resampling to support visit 1- visit 2 analysis and group analysis
- Freesurfer to B0 transform for white matter mask
- Quantification of registration error and its propagation forward and impact on final results
- Plans for data sharing curation and timeline (integration with XNAT project, should we make plans for a NAMIC sponsored MICCAI event: Tractography Grand Challenge e.g. the one done last year for segmentation? See http://mbi.dkfz-heidelberg.de/grand-challenge2007/)
- Outcome metrics and how to best frame scientific questions for this project, steps towards manuscript preparation, milestones for spring 2008 and for Programming Week in June
3pm: coffee break
- 3-4PM Batchmake break-out session
- 4:00pm Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk).
- Identify and agree upon essential processing steps (pipeline) necessary for clinical DTI studies
- Identify Core-1 modules and methods that are a) recently integrated, b) ready to be integrated, c) in development
- Integrate with other on-going efforts
- 4:00pm Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk).
Meeting Notes
Notes of Tractography Meeting Jan 9, 2008: Meeting Notes