Difference between revisions of "2014 Summer Project Week:ManualSegmentationQA"
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<gallery> | <gallery> | ||
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]] | Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]] | ||
| + | Image:ManualSegmentationQAmodule.png| GUI | ||
| + | Image:ManSeg2.png| In action | ||
</gallery> | </gallery> | ||
==Key Investigators== | ==Key Investigators== | ||
| − | + | * IOWA: Dave Welch, Hans Johnson | |
==Project Description== | ==Project Description== | ||
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<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | * | + | * Create a Slicer module/extension to connect to a segmentation database and que 'bad' segmentations for QA raters review and editing |
| + | |||
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | * | + | * Identify bad segmentations from PostgreSQL database of QA reviews |
| + | * Load corresponding label map, T1, and T2 (if available) | ||
| + | * Color label map s.t. 'good' labels are in green and bad labels in high-contrast colors | ||
| + | * Include Editor widgets within module for label manipulation | ||
| + | * Give users ability to: | ||
| + | ** leave bad regions unchanged with confirmation | ||
| + | ** edit good regions if desired | ||
| + | ** leave notes in database | ||
| + | ** toggle specific regions on/off in scene | ||
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | * | + | * Complete |
| + | * TODO: reviewers have requested hotkeys similar to Slicer 3 for Editor which we haven't implemented yet | ||
| + | * TODO: Integrate with Subject Hierarchy module | ||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 14:11, 27 June 2014
Home < 2014 Summer Project Week:ManualSegmentationQA
GUI
In action
Key Investigators
- IOWA: Dave Welch, Hans Johnson
Project Description
Objective
- Create a Slicer module/extension to connect to a segmentation database and que 'bad' segmentations for QA raters review and editing
Approach, Plan
- Identify bad segmentations from PostgreSQL database of QA reviews
- Load corresponding label map, T1, and T2 (if available)
- Color label map s.t. 'good' labels are in green and bad labels in high-contrast colors
- Include Editor widgets within module for label manipulation
- Give users ability to:
- leave bad regions unchanged with confirmation
- edit good regions if desired
- leave notes in database
- toggle specific regions on/off in scene
Progress
- Complete
- TODO: reviewers have requested hotkeys similar to Slicer 3 for Editor which we haven't implemented yet
- TODO: Integrate with Subject Hierarchy module
