Difference between revisions of "Projects:ARRA:SlicerEM:Developer"
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== Coming == | == Coming == | ||
+ | * 9/07/2010 - [[Projects:ARRA:SlicerEM_Meeting_09072010|Meeting Week #7]] | ||
+ | |||
+ | == Past == | ||
* 8/31/2010 - [[Projects:ARRA:SlicerEM_Meeting_08312010|Meeting Week #6]] | * 8/31/2010 - [[Projects:ARRA:SlicerEM_Meeting_08312010|Meeting Week #6]] | ||
* 8/30/2010 - [[Projects:ARRA:SlicerEM_Meeting_08302010|Meeting / EMSegment-QtPort Review]] | * 8/30/2010 - [[Projects:ARRA:SlicerEM_Meeting_08302010|Meeting / EMSegment-QtPort Review]] | ||
− | |||
− | |||
* 8/24/2010 - [[Projects:ARRA:SlicerEM_Meeting_08242010|Meeting Week #5]] | * 8/24/2010 - [[Projects:ARRA:SlicerEM_Meeting_08242010|Meeting Week #5]] | ||
* 8/19/2010 - [[Projects:ARRA:SlicerEM_Meeting_08192010|Meeting Week #4]] | * 8/19/2010 - [[Projects:ARRA:SlicerEM_Meeting_08192010|Meeting Week #4]] |
Revision as of 20:05, 7 September 2010
Home < Projects:ARRA:SlicerEM:DeveloperContents
Kitware Team
- Sebastien Barre - Workflow manager - 50%
- Julien Finet - Chart/Plot export - work in // with vtkChart folks - 10%
- Jean-Christophe Fillion-Robin (Project Lead) - Infrastructure / Python - 50%
- Danielle Pace - Workflow manager - 100%
Unassigned Items
lists tasks that need to be done
Work in Progress
Kilian
- Current - week 7
- week 6
- Comments and suggestions associated with EMSegment-QtPort preview
- week 5
- week 4
- week 3
- week 2
- week 1
- Review list of widget and prioritize.
Sebastien
- Work with Danielle on the workflow manager
Julien
- Current - Week 7
- ToBeDone
- Plot2D
- Week 6
- Week 5
- Graph panel design
- Plot1D
- Week 4
- Charts now work in CTK
- Week 3
- Week 2
- Marcus (Kitware Inc.) has finished a pass on the design of vtkCharts (VTK trunk).
- A local branch (github.com/finetjul/VTK) has been forked.
- Added minor improvements/bug fixes into the VTK charts (on wait for contributing back to VTK trunk).
- Week 1
- Discuss with vtkChart folks and see how existing CTK Charting [1] classes can be moved to VTKChart [2]
Jc
- Current - Week7
- ToBeDone
- Define python task skeleton
- Week6
- Refine Anatomical tree widget
- Work with Danielle to integrate workflow manager
- Week 5
- Update anatomical tree to support editing of label + support of update checkbox
- connect workflow manager
- port the validation code
- Week 4
- Port dynamic list of Input Channels to Qt. See DynamicListOfInputChannel
- Review workflowManager and integrate to CTK
- Initial port of Anatomical tree widget
- Week 3
- Define a clear agenda for the August 9th meeting
- Enable CTK/PythonQt wrapping of QtModules (Gui, UITools, ... ). See 14448, 14449, CTK
- Week 2
- Update QtModule to use EMSegment libraries. See 14250, 14251
- Setup a priority list for the widget for Kilian to edit. See List of widget to prioritize
- Updated logic to initialize properly. See 14353
- Design static UI panel
- Created corresponding UI files, header and cxx files. See 14350
- Port Task selector to Qt. See TaskSelector
- Week 1
- Create initial directory structure and QtModule skeleton. See 14138
- Review UI - Added help and button (next, back, etc..) See 14195
- Write down Developer page
- Milestones for project at next weeks meeting. See Projects:ARRA:SlicerEM:Developer#Milestones
- Review which widgets should be converted. See Projects:ARRA:SlicerEM:Developer:WidgetsToPort
- Convert EMSegment/{Algorithm,Graph,MRML,Registration} to shared library. See 14245, 14428, 14258
Danielle
- Current - Week7
- Week6
- RunSegmentation panel
- Finish integrating workflow manager with Qt designer
- Week 5
- Started to port RunSegmentation panel (complete with the exception of the ROI widget)
- Started to integrate workflow manager with Qt Designer
- Port DefinePreprocessing panel (without tcl scripts)
- Ported "startSegmentation" mechanism.
- Integrate workflow manager into EMSegment module
- Enable branching workflows in workflow manager, for use with "simple" and "advanced" EM Segment workflows
- Week 4
- Integrate workflow manager into EMSegment module
- jumping directly to "finish" state
- Week 3
- Should provide a high-level and a low-level API
- The High-level API should be very simple
- All method related to QState should be protected.
- Add a method lastStep()
- Make sure it's possible to configure step (Test associated with button, should Next be enabled)
- Remove any UI related function from CTKCore
- Review API to review API validateForward / validateBackward / enter / exit
- Specify validation, entryProcessing, exitProcessing, populateStepWidgetsList, showUI, hideUI function for custom steps via signal-slot mechanism, instead of requiring derivation of ctkWorkflowStep
- allow user to set layouts instead of hard-coding the layout type
- testing for ctkWorkflowManager / ctkWorkflowStep / ctkWorkflowWidget
- example for using the workflow manager
- Week 2
- Develop the skeleton / API of the ctkWorkflowManager / ctkWorkflowStep / ctkWorkflowWidget
- Implement core functionality of ctkWorkflowManager / ctkWorkflowStep / ctkWorkflowWidget
- ctkWorkflowWidget convenience class with integrated Back/Next/Finish buttons
- Clean up code, documentation - See WorkflowManager
- Week 1
- Get familiar with Git and how to contribute to CTK
- Evaluate QtStateMachine and identify what are its limitation
Johan
- Current - Week7
- Week6
- Week 5
- Create a widget qMRMLLabelComboBox able to display a vtkMRMLTableColorNode. See 14702
- Compile slicer
- Start to port vtkMRMLColoreTableNode selector
Team meeting
lists the team meeting and includes a pointer to the associated notes
Coming
- 9/07/2010 - Meeting Week #7
Past
- 8/31/2010 - Meeting Week #6
- 8/30/2010 - Meeting / EMSegment-QtPort Review
- 8/24/2010 - Meeting Week #5
- 8/19/2010 - Meeting Week #4
- 8/9/2010 - Midterm meeting with Kilian
- 8/3/2010 - Meeting Week #3
- 7/27/2010 - Meeting Week #2
- 7/20/2010 - Meeting Week #1
- 7/14/2010 - WorkflowManager meeting
- 7/8/2010 - Kickoff meeting
Milestones
Please note that the current list may be refined
- July 16th
Create QtModule skeletonWrite developer documentation
- July 23th
Factor out EMSegment{Algorithm, Graph, MRML, Registration} librariesWorkflow manager: Class skeletons (ctkWorkflowManager, ctkWorkflowStep)
- July 30th
- Port:
TaskSelector,NodeAttributes,ProbabilityMapSelector Python scripting: 10%
- Port:
- August 6th
- Port:
AtlasToInputRegistration,Segmentation_Mode,InputChannelSelector,DynamicListOfInputChannel - Panel:
Define Task,Define Input Channel (static version) Python scripting: 50%
- Port:
- August 13th
- Port:
AnatomicalTree 50%,IntensityDistribution Workflow manager: Start integration with Static UI Panel- Panel:
Define preprocessing, Specify intensity distribution (without Manual sampling) Python scripting 60%
- Port:
- August 20th
- Port:
WeightEditor 20%,AnatomicalTree 85%,PlotClassDistribution1D 50% - Panel:
Define Anatomical tree,Define Atlas
- Port:
- August 27th
- Port:
AnatomicalTree 85%,OutputLabelMapSelector 50%,PlotClassDistribution1D 100%,WeightEditor 60%,WorkingDirSelector Workflow manager: Complete integration- Panel:
Edit node-based parameters 50%,Run segmentation 35%,Define Input Channel 100%,Edit registration parameter
- Port:
- September 3rd
- Port: AnatomicalTree 100%, ClassWeightsOverview, StoppingConditionsEditor, VOIEditor (just UI part), WeightEditor 100%, OutputLabelMapSelector 100%
- Panel: Run segmentation 100%, Edit node-based parameters 100%
- Python scripting ???%
- Green dashboard expected
- September 10th
- Polish
- Review Doxygen, Style
- If time permit:
- Python scripting - complete integration
- PrintConfig
- ManualSampling
- ColorMapViewOnly,
Colormap selector - AdvancedNodeParameterEditor
- PlotClassDistribution2D
- Panel: Integrate Manual sampling to Define Anatomical tree panel
Project components
Development environment
Contributing to CTK
- Each developer should fork CTK official repository (github.com/commontk/CTK). Doing so will allow to:
- backup its work before integration with CTK master.
- publish and share its work
- Refer to the follow document: http://www.commontk.org/index.php/Contributing_to_CTK.
- WorkflowManager code should be added to ctkWorkflowManager branch.
- That branch has been created on http://github.com/jcfr/CTK.
- See [3] to obtain details on how to checkout a branch from a different fork
Working on Slicer / CTK in parallel
- Step1: Build slicer following these instruction. Enable both Slicer3_USE_KWWIDGETS and Slicer3_USE_QT.
- Step2: Create a github user [4] and fork CTK (http://github.com/commontk/CTK).
- Step3: Build CTK - See these instructions - Consider also the instruction below to configure CTK as expected by Slicer
- Make sure you set the following options
- PluginFramework should be disable: CTK_LIB_PluginFramework:BOOL=OFF and CTK_PLUGIN_org.commontk.eventbus:BOOL=OFF
- Enable VTK: CTK_LIB_Visualization/VTK/Widgets:BOOL=ON, VTK_DIR:PATH=<SlicerVTK_Binary_DIR>
- Make sure you set the following options
cd MyProjects git clone http://github.com/me/CTK mkdir CTK-Superbuild cd CTK-Superbuild ccmake -DCTK_LIB_PluginFramework:BOOL=OFF -DCTK_PLUGIN_org.commontk.eventbus:BOOL=OFF -DCTK_LIB_Visualization/VTK/Widgets:BOOL=ON -DVTK_DIR:PATH=/home/me/MyProjects/Slicer3-SuperBuild/VTK-build ../CTK make
- Step4: Re-configure slicer4 passing CTK_DIR
cd MyProjects/Slicer3-Superbuild ccmake -DCTK_DIR:PATH=/home/me/MyProjects/CTK-Superbuild .
EMSegment source code
- The name of the Qt module is EMSegment.
- The associated source code, hosted on slicer3 repository (trunk) is located in the following directory: /QTModules/EMSegment
- Every commit related to EMSegment should be prefixed with either:
- ENH: EMSegment - <Message summary>
- COMP: EMSegment - <Message summary>
- BUG: EMSegment - <Message summary>
- STYLE: EMSegment - <Message summary>