Difference between revisions of "Projects:ARRA:SlicerEM:Developer"
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* July 30th | * July 30th | ||
− | ** Port: <del>[[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#TaskSelector|TaskSelector]]</del> | + | ** Port: <del>[[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#TaskSelector|TaskSelector]]</del>, [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#NodeAttributes|NodeAttributes]], [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#ProbabilityMapSelector|ProbabilityMapSelector]] |
** Python scripting: 10% | ** Python scripting: 10% | ||
* August 6th | * August 6th | ||
− | ** Port: [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#AnatomicalTree|AnatomicalTree 50%]], [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#AtlasToInputRegistration|AtlasToInputRegistration]] | + | ** Port: [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#AnatomicalTree|AnatomicalTree 50%]], [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#AtlasToInputRegistration|AtlasToInputRegistration]], [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#Segmentation_Mode|Segmentation_Mode]],[[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#InputChannel_selector|InputChannelSelector]], [[Projects:ARRA:SlicerEM:Developer:WidgetsToPort#DynamicListOfInputChannel|DynamicListOfInputChannel]] |
** Panel: '''Define preprocessing''', '''Define Task''', '''Define Input Channel''' (static version) | ** Panel: '''Define preprocessing''', '''Define Task''', '''Define Input Channel''' (static version) | ||
** Python scripting: 50% | ** Python scripting: 50% |
Revision as of 15:20, 3 August 2010
Home < Projects:ARRA:SlicerEM:DeveloperContents
Kitware Team
- Sebastien Barre - Workflow manager - 50%
- Julien Finet - Chart/Plot export - work in // with vtkChart folks - 10%
- Jean-Christophe Fillion-Robin (Project Lead) - Infrastructure / Python - 50%
- Danielle Pace - Workflow manager - 100%
Unassigned Items
lists tasks that need to be done
Work in Progress
Kilian
- current week - week 3
- week 2
- week 1
- Review list of widget and prioritize.
Sebastien
- Work with Danielle on the workflow manager
Julien
- Current week - Week 3
- Week 2
- Marcus (Kitware Inc.) has finished a pass on the design of vtkCharts (VTK trunk).
- A local branch (github.com/finetjul/VTK) has been forked.
- Added minor improvements/bug fixes into the VTK charts (on wait for contributing back to VTK trunk).
- Week 1
- Discuss with vtkChart folks and see how existing CTK Charting [1] classes can be moved to VTKChart [2]
Jc
- Current week - Week 3
- Define a clear agenda for the August 9th meeting
- Design static UI panel
- Port dynamic list of Input Channels to Qt. See DynamicListOfInputChannel
- Week 2
- Update QtModule to use EMSegment libraries. See 14250, 14251
- Setup a priority list for the widget for Kilian to edit. See List of widget to prioritize
- Updated logic to initialize properly. See 14353
- Design static UI panel
- Created corresponding UI files, header and cxx files. See 14350
- Port Task selector to Qt. See TaskSelector
- Week 1
- Create initial directory structure and QtModule skeleton. See 14138
- Review UI - Added help and button (next, back, etc..) See 14195
- Write down Developer page
- Milestones for project at next weeks meeting. See Projects:ARRA:SlicerEM:Developer#Milestones
- Review which widgets should be converted. See Projects:ARRA:SlicerEM:Developer:WidgetsToPort
- Convert EMSegment/{Algorithm,Graph,MRML,Registration} to shared library. See 14245, 14428, 14258
Danielle
- Current week - Week 3
- ctkWorkflowWidgets based on QDialog
- support in Qt Designer
- testing for ctkWorkflowManager / ctkWorkflowStep / ctkWorkflowWidget
- example for using the workflow manager
- clean up code for ctkWorkflowManagerWorkflowWidgetTest
- jumping directly to "finish" state
- specify validation/showUI/hideUI functions via callback
- incorporate with Qt designer
- allow user to set layouts instead of hard-coding the layout type
- workflow widget based on a dialog box
- Week 2
- Develop the skeleton / API of the ctkWorkflowManager / ctkWorkflowStep / ctkWorkflowWidget
- Implement core functionality of ctkWorkflowManager / ctkWorkflowStep / ctkWorkflowWidget
- ctkWorkflowWidget convenience class with integrated Back/Next/Finish buttons
- Clean up code, documentation - See WorkflowManager
- Week 1
- Get familiar with Git and how to contribute to CTK
- Evaluate QtStateMachine and identify what are its limitation
Team meeting
lists the team meeting and includes a pointer to the associated notes
Coming
- 8/9/2010 - Meeting / Midterm meeting with Kilian
Past
- 7/27/2010 - Meeting / Weekly meeting #2
- 7/20/2010 - Meeting / Weekly meeting #1
- 7/14/2010 - WorkflowManager meeting
- 7/8/2010 - Kickoff meeting
Milestones
Please note that the current list may be refined
- July 16th
Create QtModule skeletonWrite developer documentation
- July 23th
Factor out EMSegment{Algorithm, Graph, MRML, Registration} librariesWorkflow manager: Class skeletons (ctkWorkflowManager, ctkWorkflowStep)
- July 30th
- Port:
TaskSelector, NodeAttributes, ProbabilityMapSelector - Python scripting: 10%
- Port:
- August 6th
- Port: AnatomicalTree 50%, AtlasToInputRegistration, Segmentation_Mode,InputChannelSelector, DynamicListOfInputChannel
- Panel: Define preprocessing, Define Task, Define Input Channel (static version)
- Python scripting: 50%
- August 13th
- Port: AnatomicalTree 100%, IntensityDistribution
- Workflow manager: Start integration with Static UI Panel
- Panel: Define Anatomical tree, Edit registration parameter, Specify intensity distribution (without Manual sampling)
- Python scripting: 75%
- August 20th
- Port: WeightEditor
- Panel: Integrate Manual sampling to Define Anatomical tree panel
- Python scripting: 100%
- August 27th
- Port: WorkingDirSelector, ClassWeightsOverview, OutputLabelMapSelector
- Workflow manager: Complete integration
- Panel: Edit node-based parameters (Need to define exactly content of Advanced Tab)
- September 3rd
- Port: VOIEditor
- Panel:Run segmentation
- Green dashboard expected
- September 10th
- Polish
- Review Doxygen, Style
- If time permit:
- PrintConfig
- ManualSampling, StoppingConditionsEditor
- ColorMapViewOnly, Colormap selector
- AdvancedNodeParameterEditor
- Graph 2D, Dynamic panel
Project components
Development environment
Contributing to CTK
- Each developer should fork CTK official repository (github.com/commontk/CTK). Doing so will allow to:
- backup its work before integration with CTK master.
- publish and share its work
- Refer to the follow document: http://www.commontk.org/index.php/Contributing_to_CTK.
- WorkflowManager code should be added to ctkWorkflowManager branch.
- That branch has been created on http://github.com/jcfr/CTK.
- See [3] to obtain details on how to checkout a branch from a different fork
Working on Slicer / CTK in parallel
- Step1: Build slicer following these instruction. Enable both Slicer3_USE_KWWIDGETS and Slicer3_USE_QT.
- Step2: Create a github user [4] and fork CTK (http://github.com/commontk/CTK).
- Step3: Build CTK - See these instructions - Consider also the instruction below to configure CTK as expected by Slicer
- Make sure you set the following options
- PluginFramework should be disable: CTK_LIB_PluginFramework:BOOL=OFF and CTK_PLUGIN_org.commontk.eventbus:BOOL=OFF
- Enable VTK: CTK_LIB_Visualization/VTK/Widgets:BOOL=ON, VTK_DIR:PATH=<SlicerVTK_Binary_DIR>
- Make sure you set the following options
cd MyProjects git clone http://github.com/me/CTK mkdir CTK-Superbuild cd CTK-Superbuild ccmake -DCTK_LIB_PluginFramework:BOOL=OFF -DCTK_PLUGIN_org.commontk.eventbus:BOOL=OFF -DCTK_LIB_Visualization/VTK/Widgets:BOOL=ON -DVTK_DIR:PATH=/home/me/MyProjects/Slicer3-SuperBuild/VTK-build ../CTK make
- Step4: Re-configure slicer4 passing CTK_DIR
cd MyProjects/Slicer3-Superbuild ccmake -DCTK_DIR:PATH=/home/me/MyProjects/CTK-Superbuild .
EMSegment source code
- The name of the Qt module is EMSegment.
- The associated source code, hosted on slicer3 repository (trunk) is located in the following directory: <SRC>/QTModules/EMSegment
- Every commit related to EMSegment should be prefixed with either:
- ENH: EMSegment - <Message summary>
- COMP: EMSegment - <Message summary>
- BUG: EMSegment - <Message summary>
- STYLE: EMSegment - <Message summary>