Difference between revisions of "2014 Summer Project Week:Multidim Data"

From NAMIC Wiki
Jump to: navigation, search
 
(6 intermediate revisions by 2 users not shown)
Line 2: Line 2:
 
<gallery>
 
<gallery>
 
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 +
Image:MultidimDataInteractivePlotting.gif|Interactive plotting of voxel intensity over time.
 +
Image:MultidimDataRegistration.gif|Registration of 4D sequences and visualization of the resulting 4D transforms.
 
</gallery>
 
</gallery>
  
 
==Key Investigators==
 
==Key Investigators==
 +
* Andras Lasso (Queen's U)
 
* Kevin Wang (Princess Margaret Cancer Center)
 
* Kevin Wang (Princess Margaret Cancer Center)
* Andras Lasso (Queen's U)
 
  
 
==Project Description==
 
==Project Description==
Line 20: Line 22:
 
<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
 
* Support for transform (linear and deformable) sequence data type.
 
* Support for transform (linear and deformable) sequence data type.
* support for label statistics for multidim data.
+
* Support for label statistics for multidim data.
* motion tracking module.
+
* Motion tracking module.
 
+
* Generic CLI support: pass multiple file names for node sequences
 
</div>
 
</div>
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Progress</h3>
 
<h3>Progress</h3>
* TBA
+
* Added mouse cursor position to vtkMRMLCrosshairNode (https://github.com/Slicer/Slicer/pull/147), so any module can easily observe the current mouse position in slice viewers. Other pointing devices can use it, too (LeapMotion, etc).
 +
** Used also by Data probe module and Transform module info window
 +
* Integrated features developed by Kevin Wang:
 +
** Interactive plotting of volume intensities over time
 +
** Volume sequence registration
 +
** Multidimensional labelmap statistics
 
</div>
 
</div>
 +
</div>
 +
 +
<div style="width: 97%; float: left;">
 +
==References==
 +
* Multidim data extension source code: [https://www.assembla.com/code/slicerrt/subversion/nodes/1794/trunk/MultidimData/src]
 
</div>
 
</div>

Latest revision as of 14:55, 27 June 2014

Home < 2014 Summer Project Week:Multidim Data

Key Investigators

  • Andras Lasso (Queen's U)
  • Kevin Wang (Princess Margaret Cancer Center)

Project Description

Objective

  • Ongoing work to improve the current multidim data work to support more use cases.
  • Migrate part/all functionalities in MulitVolume extension into Multidim extension.

Approach, Plan

  • Support for transform (linear and deformable) sequence data type.
  • Support for label statistics for multidim data.
  • Motion tracking module.
  • Generic CLI support: pass multiple file names for node sequences

Progress

  • Added mouse cursor position to vtkMRMLCrosshairNode (https://github.com/Slicer/Slicer/pull/147), so any module can easily observe the current mouse position in slice viewers. Other pointing devices can use it, too (LeapMotion, etc).
    • Used also by Data probe module and Transform module info window
  • Integrated features developed by Kevin Wang:
    • Interactive plotting of volume intensities over time
    • Volume sequence registration
    • Multidimensional labelmap statistics

References

  • Multidim data extension source code: [1]