Difference between revisions of "4D DTI tractography in Slicer for TBI"

From NAMIC Wiki
Jump to: navigation, search
 
(3 intermediate revisions by the same user not shown)
Line 5: Line 5:
 
Image:DWI_sample_subject.png | DWI image of the same subject
 
Image:DWI_sample_subject.png | DWI image of the same subject
 
</gallery>
 
</gallery>
 +
  
 
[[Image:diff_reg_TBI.png|thumb|center|800px|Results of affine and Bspline registration]]
 
[[Image:diff_reg_TBI.png|thumb|center|800px|Results of affine and Bspline registration]]
Line 37: Line 38:
 
** tried affine, Bspline, demons registration modules.
 
** tried affine, Bspline, demons registration modules.
 
* worked with Andrei and Anuja together to solve the problem of loading DICOM images.
 
* worked with Andrei and Anuja together to solve the problem of loading DICOM images.
 +
* talked to Ron and learned DWI to Full Brain Tractography, MultiVolumeImporter, MultiVolumeExplorer modules in Slicer 4.
 
* discussed with Andrei and Micah about recent progress and future plan.
 
* discussed with Andrei and Micah about recent progress and future plan.
 
* attended the TBI DBP Team Meeting.
 
* attended the TBI DBP Team Meeting.

Latest revision as of 11:18, 11 January 2013

Home < 4D DTI tractography in Slicer for TBI


Results of affine and Bspline registration

Key Investigators

Bo Wang, Andrei Irimia, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig

Objective

  • Combining structural and DTI information for assessment of recovery and treatment efficacy for TBI.
  • Coregistration of structural and DTI data of TBI.
  • Applying 4D model to DTI data to investigate the changes between acute and chronic time points.


Approach, Plan

  • Register DTI to structural images.
  • Apply deformation between acute and chronic time points to the co-registered DTI images
  • Evaluate initial result with our collaborators

Progress

  • using Slicer registration modules to do coregistration between structural and diffusion MRI.
    • talked to James about using Slicer modules to do coregistration, tried his script of using Slicer modules to process TBI data.
    • talked to Martin about coregistration of structural and diffusion MRI in Slicer.
    • tried affine, Bspline, demons registration modules.
  • worked with Andrei and Anuja together to solve the problem of loading DICOM images.
  • talked to Ron and learned DWI to Full Brain Tractography, MultiVolumeImporter, MultiVolumeExplorer modules in Slicer 4.
  • discussed with Andrei and Micah about recent progress and future plan.
  • attended the TBI DBP Team Meeting.