Difference between revisions of "Common resampling and conversion utility functions in Slicer"
From NAMIC Wiki
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | * | + | * Use cases |
| − | + | ** Convert images from VTK+MRML to ITK to supply input to Plastimatch algorithms (RT) | |
| − | + | ** Resample a labelmap to match the lattice of another one for voxel-by voxel comparison (RT, validating/comparing segmentations) | |
| − | + | ** Resample mask to match the input DWI image for DWI to DTI conversion (Hans Johnson, UIowa) | |
* to do... | * to do... | ||
Revision as of 17:40, 18 June 2013
Home < Common resampling and conversion utility functions in Slicer
Key Investigators
- Isomics: Steve Pieper
- UIowa: Hans
- PMH Toronto: Kevin Wang
- Queen's: Csaba Pinter
Objective
The goal is to develop common utility functions to perform resampling of vtkMRMLVolumeNode using a reference volume node and conversion of vtkMRMLVolumeNode to itkImage.
Approach, Plan
- discuss during the project week using google hangout.
- explain what has been done in SlicerRT to deal with these two functions.
- Csaba has found a bug in vtkImageReslice so we need to follow up with this and report it back to David Gobbi.
- Try this implementation to see if Csaba's use case works with it: https://github.com/pieper/Regimatic/blob/master/Regimatic.py#L330-371
Progress
- Use cases
- Convert images from VTK+MRML to ITK to supply input to Plastimatch algorithms (RT)
- Resample a labelmap to match the lattice of another one for voxel-by voxel comparison (RT, validating/comparing segmentations)
- Resample mask to match the input DWI image for DWI to DTI conversion (Hans Johnson, UIowa)
- to do...
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a Slicer module
