Difference between revisions of "IGT:ToolKit/Navigation-with-Aurora"

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[[Image:AdvancedNavigationTutorialSummary.png|300px|thumb]]
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Back to [[IGT:ToolKit|IGT:ToolKit]]
 
Back to [[IGT:ToolKit|IGT:ToolKit]]
  
The general navigation system consists of the following components:<br>
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=Advanced Slicer3 Navigation Tutorial=
* Slicer3: the base platform for navigation
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* IGT loadable modules: Software modules, pluginned into Slicer3, for supporting IGT specific functionality
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==Overview:==
* IGSTK: An interfacing tool for common commercial tracking devices
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* Tracking device: e.g. NDI Aurora tracking system
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This tutorial uses an NDI Aurora tracking system to explain how navigation works in Slicer3.  It also contains a more advanced description of the OpenIGTLink protocol.
This tutorial explains how to set up these components to build and use a general purpose navigation system.
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<br><br>
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The general IGT navigation system consists of the following components:
=== '''STEP ONE: Install Slicer3''' ===
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* Slicer3 - the base platform plus IGT modules such as OpenIGTLink and NeuroNav
Follow the instructions here to install Slicer3:<br>
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* IGSTK - an interfacing tool for common commercial tracking devices
http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Install-Slicer3
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* A tracking device - such as the NDI Aurora magnetic tracking system
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Before you start the advanced tutorial, you should go through the [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Navigation-tutorial Basic Navigation Tutorial].
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==Tutorial Materials==
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* Tutorial slides for the Advanced Navigation Tutorial: [[Media:IGTAdvancedNavigation.pdf|pdf (recommended)]] or [[Media:IGTAdvancedNavigation.ppt|ppt]]
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* Atlas: download the .zip file from either the [http://www.na-mic.org/pages/Special:PubDB_View?dspaceid=1265 SPL-PNL Brain Atlas] or the [http://www.spl.harvard.edu/pages/Special:PubDB_View?dspaceid=1266 SPL Abdominal Atlas]
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==Required Hardware==
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* [http://www.ndigital.com NDI] Aurora tracking device with tracked tool
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* If your computer does not have a serial port, you will need a Serial-to-USB converter
  
=== '''Step 2: Install OpenIGTLink module''' ===
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==Software Installation Instructions==
* Download the binary of OpenIGTLink module:
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=== '''Step 1: Install Slicer3''' ===
** For your Linux box, click [[Media:OpenIGTLink.tgz|'''here''']].
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Go to the [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Install-Slicer3 Slicer3 Install] site.
** For your Windows box, click '''here'''.
 
** For your Mac box, click '''here'''.
 
* Unzip the file.
 
* Copy the binary into igt-tutorial/Slicer3-3.0.2008-05-21-linux-x86/lib/Slicer3/Modules.
 
<br>
 
If you want to build OpenIGTLink module by yourself, find the instructions [[IGT:ToolKit/Build-OpenIGTLink|'''here''']].
 
  
=== '''Step 3: Install IGSTK''' ===
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=== '''Step 2: Install IGSTK Package''' ===
* Download the binary of IGSTK:
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IGSTK package is used to acquire tracking data from the NDI Aurora tracking system. To build it from the source code, [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Build-IGSTK find the instructions here].
** For your Linux box, click [[Media:IGSTKSandbox.tgz|'''here''']].
 
** For your Windows box, click '''here'''.
 
** For your Mac box, click '''here'''.
 
* Unzip the file to '''igt-tutorial'''.
 
  
=== '''Step 4: Connect NDI Aurora tracking device''' ===
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=== '''Step 3: Set up Communication between IGSTK and Slicer''' ===
* Set up your NDI Aurora tracking device
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Here are the [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Connect-IGSTK-Slicer steps] to connect IGSTK and Slicer3.
* Connect it to the computer where IGSTK will be run.
 
** By default, Aurora has only serial port connection.
 
** If your computer doesn't have a serial port, you need to have a serial-to-USB converter.
 
  
=== '''Step 5: Perform navigation''' ===
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==People==
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* [http://www.spl.harvard.edu/pages/People/tokuda Junichi Tokuda]
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* [http://www.spl.harvard.edu/pages/People/hliu Haiying Liu]
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* [http://www.spl.harvard.edu/pages/People/noby Nobuhiko Hata]
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* [http://www.spl.harvard.edu/pages/People/dpace Danielle Pace]

Latest revision as of 18:08, 25 May 2009

Home < IGT:ToolKit < Navigation-with-Aurora
AdvancedNavigationTutorialSummary.png

Back to IGT:ToolKit

Advanced Slicer3 Navigation Tutorial

Overview:

This tutorial uses an NDI Aurora tracking system to explain how navigation works in Slicer3. It also contains a more advanced description of the OpenIGTLink protocol.

The general IGT navigation system consists of the following components:

  • Slicer3 - the base platform plus IGT modules such as OpenIGTLink and NeuroNav
  • IGSTK - an interfacing tool for common commercial tracking devices
  • A tracking device - such as the NDI Aurora magnetic tracking system

Before you start the advanced tutorial, you should go through the Basic Navigation Tutorial.

Tutorial Materials

Required Hardware

  • NDI Aurora tracking device with tracked tool
  • If your computer does not have a serial port, you will need a Serial-to-USB converter

Software Installation Instructions

Step 1: Install Slicer3

Go to the Slicer3 Install site.

Step 2: Install IGSTK Package

IGSTK package is used to acquire tracking data from the NDI Aurora tracking system. To build it from the source code, find the instructions here.

Step 3: Set up Communication between IGSTK and Slicer

Here are the steps to connect IGSTK and Slicer3.

People