Difference between revisions of "2014 Summer Project Week:TBI Segmentation"

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Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
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Image:TBI_active_seg.jpg‎| Segmentation result of a subject
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Image:Active_4D.png‎| Illustration of user interaction
 
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<h3>Objective</h3>
 
<h3>Objective</h3>
*
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* The primary objective is to modify the existing code for a Slicer extension.
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* Determine approaches for integrating the current command line tool into Slicer 3D.
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* Understand the workflow of Python scripting module for integrating the current command line tool into Slicer 3D.
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<h3>Approach, Plan</h3>
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<h3>Approach, Plan</h3>  
*
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* Try to build a basic workflow based on Slicer4Python tutorial.
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* Learn from other Slicer developers for integrating the current code into Slicer.
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<h3>Progress</h3>
 
<h3>Progress</h3>
*
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* Improved the instruction document of the current command line tool for interactive TBI segmentation.
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* Did test for writing Python script to call C++ binaries
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* Did test based on Slicer4Python tutorial, need to continue working on this.
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== Reference ==
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* [http://www.na-mic.org/Wiki/index.php/DBP3:UCLA TBI DBP]
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* [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration) Code Repo]
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* [http://www.cs.utah.edu/~bowang/projects/active4D/4D_Active_Cut.html 4D Active Cut]
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* [http://link.springer.com/chapter/10.1007/978-3-319-02126-3_4 Modeling 4D changes in TBI]

Latest revision as of 03:47, 27 June 2014

Home < 2014 Summer Project Week:TBI Segmentation

Key Investigators

  • GE: Marcel Prastawa
  • Utah: Bo Wang, Guido Gerig
  • USC: Andrei Irimia, Jack Van Horn

Project Description

Objective

  • The primary objective is to modify the existing code for a Slicer extension.
  • Determine approaches for integrating the current command line tool into Slicer 3D.
  • Understand the workflow of Python scripting module for integrating the current command line tool into Slicer 3D.

Approach, Plan

  • Try to build a basic workflow based on Slicer4Python tutorial.
  • Learn from other Slicer developers for integrating the current code into Slicer.

Progress

  • Improved the instruction document of the current command line tool for interactive TBI segmentation.
  • Did test for writing Python script to call C++ binaries
  • Did test based on Slicer4Python tutorial, need to continue working on this.

Reference