Projects:RegistrationDocumentation:RegLibTable

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this page is under active development and is being updated regularly. Comments welcome to the slicer-users mailing list

Registration Library Cases : Sortable Table

to link to the library case page, click on the thumbnail image, to link to the toolbox documentation, click on the link in the toolbox column. To sort the table by a category, click on the sort icon in the column header.
Legend:


id thumbnail structure pathology DOF toolbox modality description status
1 RegLib C01: Tumor change assessment brain meningioma 12 BRAINSfit MRI T1 change detection, tumor follow-up
This case is complete and up to date for version 3.6.1
2 RegLib C02: MS multispectral alignment brain multiple sclerosis 12 BRAINSfit MRI T2 FLAIR
This case is complete and up to date for version 3.6.1
3 RegLib C03: DTI alignment brain tumor nonrigid Fast Nonrigid BSpline DTI align DTI volume with structural reference scan (T2)
This case is complete and up to date for version 3.6.1
4 RegLib C04: MS Lesion baseline Brain multiple sclerosis 12 BRAINSfit or Expert Automated MRI PD/T2 T1Gd align 2 sets of multi-contrast MRI for lesion change assessment
This case is complete and up to date for version 3.6.1
5 RegLib 05: Knee MRI subject 1 knee N/A 12 Surface Registration MRI inter-subject alignment of knee MRI for atlas-based segmentation
This case is complete and up to date for version 3.6.1
6 RegLib 06: Breast MRI breast tumor 6 + nonrigid Manual + Fast Nonrigid BSpline MRI post-intervention assessment of breast cancer
This case is complete and up to date for version 3.6.1
7 RegLib 07: Prostate baseline prostate N/A 12 + nonrigid Fast Affine + Fast Nonrigid BSpline MRI change-assessment in post-intervention MRI follow-up c
this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list
8 RegLib C08: PET-CT1 abdominal, thoracic path 12 + nonrigid Fast Affine + Fast Nonrigid BSpline or BRAINSfit PET-CT follow-up change assessment from combined whole-body PET-CT pair
This case is complete and up to date for version 3.6.1
9 RegLib 09: T1 SPGR brain infarct 12 + nonrigid Fast Affine + Fast Nonrigid BSpline fMRI align fMRI with structural reference (T1) c
this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list
10 Probabilistic Tissue Atlas brain N/A 12 + nonrigid Fast Affine + Fast Nonrigid BSpline MRI align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation This case is complete and up to date for version 3.6.1
11
RegLib C11 AtlasMerge 1.png
brain none 12 Surface Registration MRI / labelmaps co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps This case is complete and up to date for version 3.6.1
12
RegLib C12 LiverTumor MRI.png
liver tumor nonrigid Fast Nonrigid BSpline MRI + CT Liver tumor ablation #1: intra-operative MRI to pre-op CT. c
this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list
13
RegLib C13 LiverTumor2 CTpost.png
liver tumor nonrigid Fast Nonrigid BSpline CT + MRI Liver tumor ablation : post-operative CT to pre-op CT & MRI c
this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list
14
RegLib C14 Thumb PET.png
brain N/A 12 Expert Automated or BRAINSfit PET + MRI alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. This case is complete and up to date for version 3.6.1
15
RegLib C15 Thumb.png
brain none 6 AC-PC Transform MRI Realigning a single brain MRI along the anterior-posterior commissure line.
This case is complete and up to date for version 3.6.1
16
RegLib C16 Brain0.png
brain N/A 6 Manual Registration:Transforms MRI manually align FLAIR MRI with anatomical reference T1.
This case is complete and up to date for version 3.6.1
18
RegLib C18 Thumb1.png
brain healthy, aging 12 BRAINSfit MRI align brain MRI both across and within exams
This case is complete and up to date for version 3.6.1
19
RegLib C19 thumb all.png
brain healthy 12 + nonrigid BRAINSfit & Fast nonrigid BSpline MRI multi-stage inter- and intra-subject MRI registration
This case is complete and up to date for version 3.6.1
27
RegLib27 DTI.png
brain tumor 12 + nonrigid BRAINSfit DTI Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)
This case is complete and up to date for version 3.6.1
29
RegLib C29 Thumb.png
brain tumor 12 + nonrigid BRAINSfit DTI Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)
This case is complete and up to date for version 3.6.1
30
RegLib C30 Thumb3.png
brain N/A 12 + nonrigid BRAINSfit DTI Alignment of DTI scan to structural reference T1 direct. No T2 available.
This case is complete and up to date for version 3.6.1
32
RegLib C30 Thumb1.png
brain N/A 12 + nonrigid BRAINSfit DTI Alignment of DTI scan to structural reference T1 direct. No T2 available.
This case is complete and up to date for version 3.6.1
33
RegLib C33 Thumb4.png
brain N/A 12 + nonrigid BRAINSfit DTI Alignment of DTI scan: inverse direction: aligning structural reference to DTI.
This case is complete and up to date for version 3.6.1
34
RegLib C34 Thumb2.png
animal N/A 12 + nonrigid BRAINSfit MRI Alignment of mouse brain MRI atlas or different age
This case is complete and up to date for version 3.6.1
17 brain pathol DOF [toollink toolname] modality descr. c
this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list