2011 Winter Project Week:Breakout Slicer with Ron

From NAMIC Wiki
Jump to: navigation, search
Home < 2011 Winter Project Week:Breakout Slicer with Ron
 Back to  Project Week Agenda

Moderator: Ron Kikinis

Introduction

  • This is an advanced topic presentation on Slicer abilities. The intention is to familiarize the NA-MIC community with Slicer abilities.
  • You have mastered the introductions and you are hungry for more.... :)
    • This means that we expect you to at least have worked through the Core Tutorials before this class.
  • Ron and the creators of modules will show you advanced capabilities in Slicer 3.6

Logistics

  • What: Advanced capabilities in Slicer
  • Who: All the new DBP engineers, all the participants new to NA-MIC
  • When: Monday afternoon: 3pm through 5pm
  • Where: Main Event Room

Data

Preliminary Program


  • Registration (Dominik Meier, Hans Johnson)
    • Update: revised dataset and Slicer Scenes for demo here:Media:RegDemo_AHM11.zip‎
    • issues
      • T1 is too high resolution to resample DTI into (will cause memory problems); use subsampled version T1_sub instead.
      • initial misalignment is regional only, BSpline portion is sufficient (no affine required)
      • masking is required for successful registration: BRAINSfit requires two masks: moving mask for the DTI_base we get from the initial DTI_estimation; for the fixed mask T1_sub we use the same one but resampled (T1_sub_mask).
      • BRAINSfit registration will take ca. 90seconds with default settings and parameters: all defaults except grid size = 7,5,5 ; masking option on
      • DTI resampling is done via Resample_DTI module

Attendees

  1. Ron Kikinis
  2. Steve Pieper
  3. UCLA DBP Engineer: Andrei Irimia
  4. Iowa DBP Engineer: Mark Scully
  5. MGH DBP Engineer: Nadya Shusharina
  6. Utah DBP Engineer: Josh Cates
  7. Utah DBP Student: Josh Blauer
  8. Utah DBP PI: Rob MacLeod
  9. Utah DBP Student: Chris Gloschat