Difference between revisions of "2015 Summer Project Week"

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==Infrastructure==
 
==Infrastructure==
 
*[[2015_Summer_Project_Week:Python_scripts_from_command_line|Simplify use of python scripts from the command line]] (Andrey Fedorov, Steve Pieper, Robin Weiss, Artem Mamonov)
 
*[[2015_Summer_Project_Week:Python_scripts_from_command_line|Simplify use of python scripts from the command line]] (Andrey Fedorov, Steve Pieper, Robin Weiss, Artem Mamonov)
*[[2015_Summer_Project_Week:CLIModules_Backgrounding_in_MeVisLab | Running CLI Modules in the background in MeVisLab]] (Hans Meine)
 
*[[2015_Summer_Project_Week:CLIModules_Indexing | CLI Modules elasticsearch / kibana dashboard]] (Hans Meine, JC, Steve Pieper)
 
*[[2015_Summer_Project_Week:CTK_Interative_Plugins | CTK plugins / paths towards interoperability with GUI & interaction]] (Hans Meine, Steve Pieper, Nicolas Rannou)
 
*[[2015_Summer_Project_Week:BRAINSFit_in_MeVisLab | Interoperability tests with "interesting" CLI modules (BRAINSFit, CIP, UKFTractography?) in MeVisLab (/Frontier)]] (Hans Meine, Steve Pieper)
 
 
*[[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | Return fiducials from CLIs]] (Nicole Aucoin,Hans Meine)
 
*[[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | Return fiducials from CLIs]] (Nicole Aucoin,Hans Meine)
 
*[[2015_Summer_Project_Week:Update Checker | Update Checker]] (Franklin King, BWH)
 
*[[2015_Summer_Project_Week:Update Checker | Update Checker]] (Franklin King, BWH)
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*[[2015_Summer_Project_Week:SegmentationNode| Use new Segmentation node in Editor]] (Andras Lasso, Steve Pieper)
 
*[[2015_Summer_Project_Week:SegmentationNode| Use new Segmentation node in Editor]] (Andras Lasso, Steve Pieper)
 
*[[2015_Summer_Project_Week:Slicer_Conda | Integrate Conda Python in Slicer]] (Raúl San José, Jorge Onieva)
 
*[[2015_Summer_Project_Week:Slicer_Conda | Integrate Conda Python in Slicer]] (Raúl San José, Jorge Onieva)
 +
*[[2015_Summer_Project_Week:CLIModules_Backgrounding_in_MeVisLab | Running CLI Modules in the background in MeVisLab]] (Hans Meine)
 +
*[[2015_Summer_Project_Week:CLIModules_Indexing | CLI Modules elasticsearch / kibana dashboard]] (Hans Meine, JC, Steve Pieper)
 +
*[[2015_Summer_Project_Week:CTK_Interative_Plugins | CTK plugins / paths towards interoperability with GUI & interaction]] (Hans Meine, Steve Pieper, Nicolas Rannou)
 +
*[[2015_Summer_Project_Week:BRAINSFit_in_MeVisLab | Interoperability tests with "interesting" CLI modules (BRAINSFit, CIP, UKFTractography?) in MeVisLab (/Frontier)]] (Hans Meine, Steve Pieper)
  
 
==Web==
 
==Web==

Revision as of 22:03, 21 June 2015

Home < 2015 Summer Project Week


PW-Summer2015.png


Welcome to the web page for the 21st Project Week! This is the first Project Week that is being held in conjunction with the CARS conference.

Logistics

  • Dates: June 21-24, 2015.
  • Location: NH Collection Constanza Hotel, Barcelona, Spain
  • REGISTRATION: Please register by adding your name to the list at the end of this page
  • Registration Fee: None. The organizers will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.
  • Hotel: You are welcome to book a room using the CARS 2015 conference services (Click here for form)
  • To attend the CARS meeting, please visit http://www.cars-int.org/

Agenda

Time Sunday, June 21 Monday, June 22
Room Berlin
Tuesday, June 23
Room Berlin
Wednesday, June 24
Room Berlin
9:00am-3:00pm:
6pm Meeting with All Participants in Hotel Constanza Lobby
10:00-11am: Rapid Introduction of all Projects and Teams

11am-3pm Work

10:00am-11am: Breakout Session:
Slicer for users (Ron Kikinis)
11am-3pm Work

Work
2:00pm-4:00pm Lunch
Places to Eat
Lunch
Places to Eat
Lunch
Places to Eat
4:00-7:00pm Work 5:00-7:00pm: Breakout Session:
Open Software Stack (Steve Pieper)
4pm-6pm: Registration Desk Open for CARS attendees. Please pick up badges.
4:00-5:00pm: Work

5:00-6pm: Report Progress

7:00pm Adjourn for the day
Places to Eat
Adjourn for the day
Places to Eat
6:00pm Adjourn Project Week and relocate to CARS Opening
7:30pm CARS Welcome Reception
  • Please note that start, end, and mealtimes have been set to match local schedules in Barcelona.
  • Here is a list of locally recommended places to eat in the vicinity of the conference hotel. All participants are responsible for their own meals.

Background

Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, built using VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.

Project Week is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, OCAIRO, and NCI Funded Image-Guided Fellowship Program.

A summary of all previous Project Events is available here.

This project week is an event endorsed by the MICCAI society.

The 21st Project Week is being held on conjunction with the CARS conference.

Please make sure that you are on the na-mic-project-week mailing list

Projects


Equipment

Image-Guided Therapy

Feature Based Image Analysis

QIICR

Infrastructure

Web

Astronomy

Registrants

Please add your name to the list. This is the registration mechanism for this project week.

  1. Tina Kapur, BWH
  2. Ron Kikinis, BWH & Fraunhofer
  3. Steve Pieper, Isomics
  4. Tamas Ungi, Queen's University, Canada
  5. Andras Lasso, Queen's University, Canada
  6. Paolo Zaffino, ImagEngLab, Magna Graecia University, Italy
  7. Salvatore Scaramuzzino, ImagEngLab, Magna Graecia University, Italy
  8. Giampaolo Pileggi, ImagEngLab, Magna Graecia University, Italy
  9. Hans Meine, University of Bremen / Fraunhofer MEVIS, Germany – canceled due to personal circumstances
  10. Nicole Aucoin, BWH
  11. Sonia Pujol, BWH
  12. Dženan Zukić, Kitware, Carrboro, NC
  13. Jayender Jagadeesan, BWH
  14. Guido Gerig, Utah
  15. Sandy Wells, BWH
  16. Matthew Toews, École de Technologie Supérieure, Montreal, Canada
  17. Frank Preiswerk, BWH
  18. Raul San Jose, BWH
  19. Jorge Onieva, BWH
  20. Yulong Zhao, Université de Rennes
  21. Laurent Chauvin, BWH
  22. Michael Onken, Open Connections
  23. Tobias Penzkofer, Department of Radiology, Charité Berlin, Germany
  24. Javier Pascau, Universidad Carlos III de Madrid, Spain
  25. Angel Torrado-Carvajal, Universidad Rey Juan Carlos, Madrid, Spain
  26. Nobuhiko Hata, BWH
  27. Robert H. Owen, BK Medical ApS, Denmark
  28. Clare Tempany, BWH
  29. Adam Rankin, Robarts
  30. Utsav Pardasani, Robarts
  31. Marcelo Romero, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
  32. J. Jesus Montufar, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
  33. Davide Punzo, Kapteyn Astronomical Institute, University of Groningen, Netherlands
  34. Andrey Fedorov, BWH
  35. Nicolas Rannou, BCH
  36. Mikael Brudfors, Universidad Carlos III de Madrid, Spain
  37. Laura Sanz, Universidad Carlos III de Madrid, Spain
  38. Eugenio Marinetto, Universidad Carlos III de Madrid, Spain
  39. David García, Universidad Carlos III de Madrid, Spain
  40. Franklin King, Queen's University / BWH
  41. Jorge García, Universidad Politécnica de Madrid, Spain
  42. Peter Behringer, BWH
  43. Caroline Essert, University of Strasbourg
  44. Sebastian Tauscher, Institute of Mechatronic Systems, Leibniz Universität Hannover, Germany
  45. Matthew Holden, Queen's University, Canada
  46. Sara Fernandez Vidal, ICM, France
  47. Laszlo Kanyasi, Perk Lab affiliate, Hungary
  48. Xiao Da, MGH
  49. Arnaud De Bruecker, École supérieure d'informatique, Brussels, Belgium
  50. Ali Gottschalk, École supérieure d'informatique, Brussels, Belgium
  51. Christophe Teixeira Pereira, École supérieure d'informatique, Brussels, Belgium
  52. Tsotne Shonia, École supérieure d'informatique, Brussels, Belgium
  53. Clara Meinzer, Semmelweis University, Hungary
  54. Yves Martelli, Galgo Medical, Barcelona, Spain