Difference between revisions of "2015 Summer Project Week"

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__NOTOC__
 
__NOTOC__
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Back to [[Events]]
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A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
  
 
[[image:PW-Summer2015.png|300px]]
 
[[image:PW-Summer2015.png|300px]]
 
<br>
 
<br>
  
 
+
=Welcome to the web page for the 21st Project Week!=
 
+
==Summary==
'''Welcome to the web page for the 21st Project Week! This is the first Project Week that is being held in conjunction with the [http://www.cars-int.org/ CARS conference].'''
+
The 21st PROJECT EVENT was held on June 21-24, 2015 in Barcelona, Spain, in conjunction with the CARS conference (http://www.cars-int.org/).  It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites (Boston Children’s Hospital, Brigham and Women’s Hospital, Charité University Hospital Berlin (Germany), École de Technologie Supérieure, (Canada), École supérieure d'informatique  (Belgium), Fraunhofer (Germany), Leibniz University, Hannover (Germany),  Magna Graecia University (Italy),Massachusetts General Hospital, Queen’s University (Canada), Robarts Research Institute (Canada), Semmelweis Medical University (Hungary), Universidad Autonoma del Estado de Mexico, Universidad Carlos III de Madrid, University of Groningen (Netherlands), Universidad de la Republica (Uruguay), Universidad Rey Juan Carlos (Madrid), Universidad Politécnica de Madrid, University of Strasbourg (France), University of Utah, and 7 companies (Kitware,  Isomics Inc,Open Connections, Galgo Medical, BK Medical ApS, ICM, Perk Lab).
 
+
 
==Logistics==
 
==Logistics==
 
 
*'''Dates:''' June 21-24, 2015.
 
*'''Dates:''' June 21-24, 2015.
 
*'''Location:'''  [http://www.nh-collection.com/hotel/nh-collection-barcelona-constanza NH Collection Constanza Hotel, Barcelona, Spain]
 
*'''Location:'''  [http://www.nh-collection.com/hotel/nh-collection-barcelona-constanza NH Collection Constanza Hotel, Barcelona, Spain]
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*'''Hotel:''' You are welcome to book a room using the CARS 2015 conference services ([http://www.cars-int.org/fileadmin/templates/download/2015/CARS_2015_accomondation.pdf Click here for form])
 
*'''Hotel:''' You are welcome to book a room using the CARS 2015 conference services ([http://www.cars-int.org/fileadmin/templates/download/2015/CARS_2015_accomondation.pdf Click here for form])
 
*To attend the CARS meeting, please visit [http://www.cars-int.org/ http://www.cars-int.org/]
 
*To attend the CARS meeting, please visit [http://www.cars-int.org/ http://www.cars-int.org/]
 +
*Premium Network at Berlin Room:
 +
**username: EVENT/CARS2015
 +
**Password=CARS
 +
 +
*Please get a badge for CARS, even if you did not register for the CARS conference. Otherwise you will not be able to come in tomorrow.
  
 
==Agenda==
 
==Agenda==
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|
 
|
'''10:00am-11am:''' <font color="#503020">'''Breakout Session:'''</font><br>[[2014_Project_Week_Breakout_Session: Slicer for users| Slicer for users]] (Ron Kikinis) <br>
+
'''10:00am-11am:''' <font color="#503020">'''Breakout Session:'''</font> - <br>[[2014_Project_Week_Breakout_Session: Slicer for users| Ask expert physicians]] (Ron Kikinis, Clare Tempany) <br>
 
'''11am-3pm''' <font color="#503020">Work
 
'''11am-3pm''' <font color="#503020">Work
 
| <font color="#503020">Work <br>
 
| <font color="#503020">Work <br>
 
|-
 
|-
|bgcolor="#ffffdd"|'''2:00pm-4:00pm'''
+
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''
 
|bgcolor="#ffffaa"|Lunch <br>  [[Barcelona Restaurants|Places to Eat]]  
 
|bgcolor="#ffffaa"|Lunch <br>  [[Barcelona Restaurants|Places to Eat]]  
 
|bgcolor="#ffffaa"|Lunch<br>  [[Barcelona Restaurants|Places to Eat]]  
 
|bgcolor="#ffffaa"|Lunch<br>  [[Barcelona Restaurants|Places to Eat]]  
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|'''5:00-7:00pm:''' <font color="#503020">'''Breakout Session:'''</font><br>[[2015_Summer_Project_Week/SoftwareStack| Open Software Stack]]  (Steve Pieper) <br>4pm-6pm: Registration Desk Open for CARS attendees. Please pick up badges. <br>
 
|'''5:00-7:00pm:''' <font color="#503020">'''Breakout Session:'''</font><br>[[2015_Summer_Project_Week/SoftwareStack| Open Software Stack]]  (Steve Pieper) <br>4pm-6pm: Registration Desk Open for CARS attendees. Please pick up badges. <br>
 
|'''4:00-5:00pm:''' <font color="#503020"> Work <br>
 
|'''4:00-5:00pm:''' <font color="#503020"> Work <br>
'''5:00-6pm:''' Report Progress
+
'''4:30-6pm:''' Report Progress
 
|-
 
|-
 
|bgcolor="#ffffdd"|'''7:00pm'''
 
|bgcolor="#ffffdd"|'''7:00pm'''
 
|bgcolor="#f0e68b"|
 
|bgcolor="#f0e68b"|
 
|bgcolor="#f0e68b"|Adjourn for the day <br>  [[Barcelona Restaurants|Places to Eat]]  
 
|bgcolor="#f0e68b"|Adjourn for the day <br>  [[Barcelona Restaurants|Places to Eat]]  
|bgcolor="#f0e68b"|Adjourn for the day <br>  [[Barcelona Restaurants|Places to Eat]]  
+
|bgcolor="#f0e68b"|Adjourn for the day <br>  [http://www.barcelona-tourist-guide.com/en/events/sant-joan/feast-sant-joan.html Sant Joan Festival]
 
|bgcolor="#f0e68b"|'''6:00pm''' Adjourn Project Week and relocate to CARS Opening<br> '''7:30pm''' CARS Welcome Reception   
 
|bgcolor="#f0e68b"|'''6:00pm''' Adjourn Project Week and relocate to CARS Opening<br> '''7:30pm''' CARS Welcome Reception   
 
|}
 
|}
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Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].  
 
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].  
 
A summary of all previous Project Events is available [[Project_Events#Past|here]].
 
  
 
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.
 
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.
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==Image-Guided Therapy==
 
==Image-Guided Therapy==
*[[2015_Summer_Project_Week:SlicerIGT|SlicerIGT tutorials for use cases]] (Tamas Ungi)
+
*[[2015_Summer_Project_Week:SlicerIGT|SlicerIGT tutorials for use cases]] (Tamas, Andras, Jay, Steve, Alvaro, Javier, Adam, Caroline, Noby, Tina)
 
*[http://www.na-mic.org/Wiki/index.php/2015_Refinement_Registration_Module Refinement of RegistrationModule] (Peter Behringer, Andrey Fedorov)
 
*[http://www.na-mic.org/Wiki/index.php/2015_Refinement_Registration_Module Refinement of RegistrationModule] (Peter Behringer, Andrey Fedorov)
 
*[[2015_Summer_Project_Week:IGTSliceletBase| Create base classes for IGT slicelet]] (Andras Lasso, Andrey Fedorov, Adam Rankin)
 
*[[2015_Summer_Project_Week:IGTSliceletBase| Create base classes for IGT slicelet]] (Andras Lasso, Andrey Fedorov, Adam Rankin)
 
*[http://www.na-mic.org/Wiki/index.php/2015_BRAINSFit_registration_in_SimpleITK BRAINSFit registration in SimpleITK] (Peter Behringer, Andrey Fedorov, Dženan Zukić)
 
*[http://www.na-mic.org/Wiki/index.php/2015_BRAINSFit_registration_in_SimpleITK BRAINSFit registration in SimpleITK] (Peter Behringer, Andrey Fedorov, Dženan Zukić)
 
*[http://www.na-mic.org/Wiki/index.php/2015_Multi_atlas_based_prostate_segmentation Multi atlas based prostate segmentation] (Paolo Zaffino, Giampaolo Pileggi, Salvatore Scaramuzzino, Peter Behringer, Andrey Fedorov, Maria Francesca Spadea)
 
*[http://www.na-mic.org/Wiki/index.php/2015_Multi_atlas_based_prostate_segmentation Multi atlas based prostate segmentation] (Paolo Zaffino, Giampaolo Pileggi, Salvatore Scaramuzzino, Peter Behringer, Andrey Fedorov, Maria Francesca Spadea)
*[http://www.na-mic.org/Wiki/index.php/2015_Multimodal_Guidance_for_Breast_Cancer_Surgery Multimodal Guidance for Breast Cancer Surgery] (Mikael Brudfors, Javier Pascau)
+
*[http://www.na-mic.org/Wiki/index.php/2015_Multimodal_Guidance_for_Breast_Cancer_Surgery Multimodal Guidance for Breast Cancer Surgery] (Mikael Brudfors, David García, Javier Pascau)
 
*[[2015_pilot trajectory planning  | Pilot Trajectory Planning(Caroline Essert, Sonia Pujol)]]
 
*[[2015_pilot trajectory planning  | Pilot Trajectory Planning(Caroline Essert, Sonia Pujol)]]
 
*[[2015_Summer_Project_Week:LinearFeatureRegistration|Linear Feature Registration]] (Matthew Holden)
 
*[[2015_Summer_Project_Week:LinearFeatureRegistration|Linear Feature Registration]] (Matthew Holden)
 
*[[2015_Summer_Project_Week:LightWeightRobotIGT | Integration of a KUKA robot using OpenIGTLink ]]  (Sebastian Tauscher, Junichi Tokuda)
 
*[[2015_Summer_Project_Week:LightWeightRobotIGT | Integration of a KUKA robot using OpenIGTLink ]]  (Sebastian Tauscher, Junichi Tokuda)
 +
*[[2015_Summer_Project_Week:USReconstruction | Gated 3D Ultrasound Reconstructions with the Help of a Single-Element US Transducer ]] (Frank Preiswerk, Laurent Chauvin)
 
*[[2015 Orthognathic Surgery|Orthognathic Surgery]] (Dženan Zukić, Kitware)
 
*[[2015 Orthognathic Surgery|Orthognathic Surgery]] (Dženan Zukić, Kitware)
 
*[[2015_Summer_Project_Week:SlicerTAVI | SlicerTAVI ]] (Adam Rankin)
 
*[[2015_Summer_Project_Week:SlicerTAVI | SlicerTAVI ]] (Adam Rankin)
 
*[http://www.na-mic.org/Wiki/index.php/2015_pyDBS pyDBS module update to Slicer4.4 (Sara Fernandez-Vidal, Yulong Zhao, Sonia Pujol)]
 
*[http://www.na-mic.org/Wiki/index.php/2015_pyDBS pyDBS module update to Slicer4.4 (Sara Fernandez-Vidal, Yulong Zhao, Sonia Pujol)]
 +
*[[2015_Summer_Project_Week:OpenSource_MRTRUS_Fusion_for_Prostate_biopsy|Open-source MRI-TRUS Fusion for Prostate biopsy]] (Andrey Fedorov, Andras Lasso, Clare Tempany)
 +
*[[2015_Summer_Project_Week:TrackerlessMRIUSFusion | Trackerless MRI - US Registration ]] (Utsav Pardasani)
 +
*[[2015_Summer_Project_Week:SordinaLinacPath | Sordina LINAC Guidance ]] (Eugenio Marinetto)
 +
*[[2015_Summer_Project_Week:USRecon | US Reconstruction ]] (Steve Pieper, Tamas Ungi,Mikael Brudfors)
  
 
==Feature Based Image Analysis==
 
==Feature Based Image Analysis==
*[[2015_Summer_Project_Week:LungCAD| LungCAD]] (Jayender Jagadeesan, Tobias Penzkofer, Sandy Wells)
+
*[[2015_Summer_Project_Week:LungCAD| LungCAD]] (Jayender Jagadeesan, Tobias Penzkofer, Sandy Wells, Clara Meinzer, Raúl San José Estepar, Jorge Onieva)
*[[2015_Summer_Project_Week:QuantitativeProstate | Texture Analysis for Prostate Imaging]] (Tobias Penzkofer, Jay Jagadeesan, Tina Kapur)
+
*[[2015_Summer_Project_Week:QuantitativeProstate | Texture Analysis for Prostate Imaging]] (Tobias Penzkofer, Jay Jagadeesan, Matthew Toews, Tina Kapur)
 
*[[2015_Summer_Project_Week:BigDataFeatures | Big Data Medical Image Analysis using Local Features]] (Matthew Toews, William Wells, Raul San Jose Estepar, Tina Kapur)
 
*[[2015_Summer_Project_Week:BigDataFeatures | Big Data Medical Image Analysis using Local Features]] (Matthew Toews, William Wells, Raul San Jose Estepar, Tina Kapur)
*[[2015_Summer_Project_Week:USReconstruction | Gated 3D Ultrasound Reconstructions with the Help of a Single-Element US Transducer ]] (Frank Preiswerk, Laurent Chauvin)
 
 
*[[2015_Summer_Project_Week:AutomaticCephalometric | Automatic Cephalometric Analysis ]] (J. Jesus Montufar, Marcelo Romero)
 
*[[2015_Summer_Project_Week:AutomaticCephalometric | Automatic Cephalometric Analysis ]] (J. Jesus Montufar, Marcelo Romero)
*[[Slicer_CIP | Slicer CIP: advanced features and deployment ]]  (Raúl San José, Alex Yarmarkovich, Jorge Onieva, James Ross, Rola Harmouche)
+
 
*[[2015_Summer_Project_Week:PAA_Ratio | PAA Ratio ]]  (Raúl San José, Alex Yarmarkovich, Jorge Onieva, James Ross, Rola Harmouche)
+
==Chest Imaging Platform==
 +
*[[2015_Summer_Project_Week:Slicer_CIP | Slicer CIP: advanced features and deployment ]]  (Raúl San José, Alex Yarmarkovich, Jorge Onieva)
 +
*[[2015_Summer_Project_Week:PAA_Ratio | PAA Ratio Module ]]  (Jorge Onieva,Raúl San José)
 +
*[[2015_Summer_Project_Week:Tracheal_Stent_Planning | Planning for tracheal stents ]]  (Raúl San José, Jorge Onieva, George Cheng)
 +
*[[2015_Summer_Project_Week:Atelectasis_Quantification | Volumetric Quantification of Atelectasis ]]  (Ángel Torrado-Carvajal, Carolina Romero, Norberto Malpica)
  
 
==QIICR==
 
==QIICR==
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==Infrastructure==
 
==Infrastructure==
*[[2015_Summer_Project_Week:Python_scripts_from_command_line|Simplify use of python scripts from the command line]] (Andrey Fedorov, Steve Pieper, Robin Weiss, Artem Mamonov)
 
*[[2015_Summer_Project_Week:CLIModules_Backgrounding_in_MeVisLab | Running CLI Modules in the background in MeVisLab]] (Hans Meine)
 
*[[2015_Summer_Project_Week:CLIModules_Indexing | CLI Modules elasticsearch / kibana dashboard]] (Hans Meine, JC, Steve Pieper)
 
*[[2015_Summer_Project_Week:CTK_Interative_Plugins | CTK plugins / paths towards interoperability with GUI & interaction]] (Hans Meine, Steve Pieper, Nicolas Rannou)
 
*[[2015_Summer_Project_Week:BRAINSFit_in_MeVisLab | Interoperability tests with "interesting" CLI modules (BRAINSFit, CIP, UKFTractography?) in MeVisLab (/Frontier)]] (Hans Meine, Steve Pieper)
 
 
*[[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | Return fiducials from CLIs]] (Nicole Aucoin,Hans Meine)
 
*[[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | Return fiducials from CLIs]] (Nicole Aucoin,Hans Meine)
*[[2015_Summer_Project_Week:Update Checker | Update Checker]] (Franklin King, BWH)
+
*[[2015_Summer_Project_Week:Integrated Virtual Reality Viewer | Integrated Virtual Reality Viewer]] (Franklin King, Utsav Pardasani)
*[[2015_Summer_Project_Week:Integrated Virtual Reality Viewer | Integrated Virtual Reality Viewer]] (Franklin King, BWH)
 
 
*[[2015_Summer_Project_Week:SegmentationNode| Use new Segmentation node in Editor]] (Andras Lasso, Steve Pieper)
 
*[[2015_Summer_Project_Week:SegmentationNode| Use new Segmentation node in Editor]] (Andras Lasso, Steve Pieper)
*[[2015_Summer_Project_Week:Slicer_Conda | Integrate Conda Python in Slicer]] (Raúl San José, Jorge Onieva)
+
*[[2015_Summer_Project_Week:Slicer_Conda | Integrate Conda Python in Slicer]] (Jorge Onieva, Raúl San José, Utsav Pardasani, Steve Pieper)
  
 
==Web==
 
==Web==
*[[2015_Summer_Project_Week:Dicom parsing with DCMJS | Dicom parsing with DCMJS]] (Nicolas Rannou, Michael Onken, Steve Pieper)
+
*[[2015_Summer_Project_Week:Dicom parsing with DCMJS | Dicom parsing with DCMJS]] (Nicolas Rannou, Yves Martelli, Michael Onken, Steve Pieper)
 
*[[2015_Summer_Project_Week:Volume rendering with DCMJS and THREEJS | Volume Rendering with DCMJS and THREEJS]] (Nicolas Rannou, Steve Pieper)
 
*[[2015_Summer_Project_Week:Volume rendering with DCMJS and THREEJS | Volume Rendering with DCMJS and THREEJS]] (Nicolas Rannou, Steve Pieper)
 
*[[2015_Summer_Project_Week:CTK for the web and touch devices| CTK for the web and touch devices]] (Nicolas Rannou, Yves Martelli, Steve Pieper)
 
*[[2015_Summer_Project_Week:CTK for the web and touch devices| CTK for the web and touch devices]] (Nicolas Rannou, Yves Martelli, Steve Pieper)
 
*[[2015_Summer_Project_Week:SlicerCardboard| Slicer for mobile-based vr goggles]] (Utsav Pardasani, Adam Rankin)
 
*[[2015_Summer_Project_Week:SlicerCardboard| Slicer for mobile-based vr goggles]] (Utsav Pardasani, Adam Rankin)
 +
*[[2015_Summer_Project_Week:PythonDevelopmentTutorial | Python developer tutorial]] (Adam Rankin)
  
 
==Astronomy==
 
==Astronomy==
*[[2015_Summer_Project_Week:Astronomy | visualization of HI in galaxies]] (Davide Punzo)
+
*[[2015_Summer_Project_Week:Astronomy | Visualization of HI in galaxies]] (Davide Punzo)
  
== '''Registrants''' ==
+
== Registrants==
  
 
Please add your name to the list.  This is the registration mechanism for this project week.
 
Please add your name to the list.  This is the registration mechanism for this project week.
#Tina Kapur, BWH
+
# Nicole Aucoin :: Brigham and Women's Hospital
#Ron Kikinis, BWH & Fraunhofer
+
# Peter Behringer :: Brigham and Women's Hospital
#Steve Pieper, Isomics
+
# Mikael Brudfors :: Charles III University of Madrid
#Tamas Ungi, Queen's University, Canada
+
# Laurent Chauvin :: Brigham and Women's Hospital
#Andras Lasso, Queen's University, Canada
+
# Xiao Da :: Massachusetts General Hospital
#Paolo Zaffino, ImagEngLab, Magna Graecia University, Italy
+
# Arnaud de Bruecker :: Ecole supérieure d'informatique
#Salvatore Scaramuzzino, ImagEngLab, Magna Graecia University, Italy
+
# Caroline Essert :: University of Strasbourg
#Giampaolo Pileggi, ImagEngLab, Magna Graecia University, Italy
+
# Andriy Fedorov :: Brigham and Women's Hospital
#''Hans Meine, University of Bremen / Fraunhofer MEVIS, Germany'' – canceled due to personal circumstances
+
# Sara Fernandez Vidal :: ICM
#Nicole Aucoin, BWH
+
# David García :: Charles III University of Madrid
#Sonia Pujol, BWH
+
# Jorge García :: Technical University of Madrid
#Dženan Zukić, Kitware, Carrboro, NC
+
# Guido Gerig :: University of Utah
#Jayender Jagadeesan, BWH
+
# Alvaro Gomez :: University of the Republic of Uruguay
#Guido Gerig, Utah
+
# Ali Gottschal :: Ecole supérieure d'informatique
#Sandy Wells, BWH
+
# Nobuhiko Hata :: Brigham and Women's Hospital
#Matthew Toews, École de Technologie Supérieure, Montreal, Canada
+
# Alfredo Higueras :: Galgo Medical
#Frank Preiswerk, BWH
+
# Matthew Holden :: Queen's University
#Raul San Jose, BWH
+
# Jayender Jagadeesan :: Brigham and Women's Hospital
#Jorge Onieva, BWH
+
# Laszlo Kanyasi :: Queen's University
#Yulong Zhao, Université de Rennes
+
# Tina Kapur :: Brigham and Women's Hospital
#Laurent Chauvin, BWH
+
# Ron Kikinis :: Brigham and Women's Hospital
#Michael Onken, Open Connections
+
# Franklin King :: Queen's University
#Tobias Penzkofer, Department of Radiology, Charité Berlin, Germany
+
# Andras Lasso :: Queen's University
#Javier Pascau, Universidad Carlos III de Madrid, Spain
+
# Eugenio Marinetto :: Charles III University of Madrid
#Angel Torrado-Carvajal, Universidad Rey Juan Carlos, Madrid, Spain
+
# Yves Martelli :: Galgo Medical
#Nobuhiko Hata, BWH
+
# Clara Meinzer :: Semmelweis University
#Robert H. Owen, BK Medical ApS, Denmark
+
# J. Jesus Montufar :: Universidad Autonoma del Estado de Mexico
#Clare Tempany, BWH
+
# Jorge Onieva :: Brigham and Women's Hospital
#Adam Rankin, Robarts
+
# Michael Onken :: Open Connections
#Utsav Pardasani, Robarts
+
# Robert H. Owen :: BK Medical ApS
#Marcelo Romero, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
+
# Utsav Pardasani :: Robarts Research Institute
#J. Jesus Montufar, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
+
# Javier Pascau :: Charles III University of Madrid
#Davide Punzo, Kapteyn Astronomical Institute, University of Groningen, Netherlands
+
# Tobias Penzkofer :: Charité Berlin Germany
#Andrey Fedorov, BWH
+
# Steve Pieper :: Isomics, Inc.
#Nicolas Rannou, BCH
+
# Giampaolo Pileggi :: Magna Graecia University
#Mikael Brudfors, Universidad Carlos III de Madrid, Spain
+
# Frank Preiswerk :: Brigham and Women's Hospital
#Laura Sanz, Universidad Carlos III de Madrid, Spain
+
# Sonia Pujol :: Brigham and Women's Hospital
#Eugenio Marinetto, Universidad Carlos III de Madrid, Spain
+
# Davide Punzo :: University of Groningen
#David García, Universidad Carlos III de Madrid, Spain
+
# Adam Rankin :: Robarts Research Institute
#Franklin King, Queen's University / BWH
+
# Nicolas Rannou :: Boston Children's Hospital
#Jorge García, Universidad Politécnica de Madrid, Spain
+
# Marcelo Romero :: Universidad Autonoma del Estado de Mexico
#Peter Behringer, BWH
+
# Raul San Jose Estepar :: Brigham and Women's Hospital
#Caroline Essert, University of Strasbourg
+
# Laura Sanz :: Charles III University of Madrid
#Sebastian Tauscher, Institute of Mechatronic Systems, Leibniz Universität Hannover, Germany
+
# Salvatore Scaramuzzino :: Magna Graecia University
#Matthew Holden, Queen's University, Canada
+
# Tsotne Shonia :: Ecole supérieure d'informatique
#Sara Fernandez Vidal, ICM, France
+
# Sebastian Tauscher :: Leibniz Universität Hannover
#Laszlo Kanyasi, Perk Lab affiliate, Hungary
+
# Christophe Teixeira Pereira :: Ecole supérieure d'informatique
#Xiao Da, MGH
+
# Clare Tempany :: Brigham and Women's Hospital
#Arnaud De Bruecker, École supérieure d'informatique, Brussels, Belgium
+
# Matthew Toews :: Ecole de Technologie Superieure
#Ali Gottschalk, École supérieure d'informatique, Brussels, Belgium
+
# Angel Torrado-Carvajal :: King Juan Carlos University
#Christophe Teixeira Pereira, École supérieure d'informatique, Brussels, Belgium
+
# Tamas Ungi :: Queen's University
#Tsotne Shonia, École supérieure d'informatique, Brussels, Belgium
+
# Sandy Wells :: Brigham and Women's Hospital
#Clara Meinzer, Semmelweis University, Hungary
+
# Paolo Zaffino :: Magna Græcia University of Catanzaro
#Yves Martelli, Galgo Medical, Barcelona, Spain
+
# Yulong Zhao :: University of Rennes
 +
# Dženan Zukić :: Kitware, Inc.

Latest revision as of 15:50, 30 March 2017

Home < 2015 Summer Project Week

Back to Events

A summary of all past Project Events.

PW-Summer2015.png

Welcome to the web page for the 21st Project Week!

Summary

The 21st PROJECT EVENT was held on June 21-24, 2015 in Barcelona, Spain, in conjunction with the CARS conference (http://www.cars-int.org/). It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites (Boston Children’s Hospital, Brigham and Women’s Hospital, Charité University Hospital Berlin (Germany), École de Technologie Supérieure, (Canada), École supérieure d'informatique (Belgium), Fraunhofer (Germany), Leibniz University, Hannover (Germany), Magna Graecia University (Italy),Massachusetts General Hospital, Queen’s University (Canada), Robarts Research Institute (Canada), Semmelweis Medical University (Hungary), Universidad Autonoma del Estado de Mexico, Universidad Carlos III de Madrid, University of Groningen (Netherlands), Universidad de la Republica (Uruguay), Universidad Rey Juan Carlos (Madrid), Universidad Politécnica de Madrid, University of Strasbourg (France), University of Utah, and 7 companies (Kitware, Isomics Inc,Open Connections, Galgo Medical, BK Medical ApS, ICM, Perk Lab).

Logistics

  • Dates: June 21-24, 2015.
  • Location: NH Collection Constanza Hotel, Barcelona, Spain
  • REGISTRATION: Please register by adding your name to the list at the end of this page
  • Registration Fee: None. The organizers will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.
  • Hotel: You are welcome to book a room using the CARS 2015 conference services (Click here for form)
  • To attend the CARS meeting, please visit http://www.cars-int.org/
  • Premium Network at Berlin Room:
    • username: EVENT/CARS2015
    • Password=CARS
  • Please get a badge for CARS, even if you did not register for the CARS conference. Otherwise you will not be able to come in tomorrow.

Agenda

Time Sunday, June 21 Monday, June 22
Room Berlin
Tuesday, June 23
Room Berlin
Wednesday, June 24
Room Berlin
9:00am-3:00pm:
6pm Meeting with All Participants in Hotel Constanza Lobby
10:00-11am: Rapid Introduction of all Projects and Teams

11am-3pm Work

10:00am-11am: Breakout Session: -
Ask expert physicians (Ron Kikinis, Clare Tempany)
11am-3pm Work

Work
1:00pm-3:00pm Lunch
Places to Eat
Lunch
Places to Eat
Lunch
Places to Eat
4:00-7:00pm Work 5:00-7:00pm: Breakout Session:
Open Software Stack (Steve Pieper)
4pm-6pm: Registration Desk Open for CARS attendees. Please pick up badges.
4:00-5:00pm: Work

4:30-6pm: Report Progress

7:00pm Adjourn for the day
Places to Eat
Adjourn for the day
Sant Joan Festival
6:00pm Adjourn Project Week and relocate to CARS Opening
7:30pm CARS Welcome Reception
  • Please note that start, end, and mealtimes have been set to match local schedules in Barcelona.
  • Here is a list of locally recommended places to eat in the vicinity of the conference hotel. All participants are responsible for their own meals.

Background

Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, built using VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.

Project Week is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, OCAIRO, and NCI Funded Image-Guided Fellowship Program.

This project week is an event endorsed by the MICCAI society.

The 21st Project Week is being held on conjunction with the CARS conference.

Please make sure that you are on the na-mic-project-week mailing list

Projects


Equipment

Image-Guided Therapy

Feature Based Image Analysis

Chest Imaging Platform

QIICR

Infrastructure

Web

Astronomy

Registrants

Please add your name to the list. This is the registration mechanism for this project week.

  1. Nicole Aucoin :: Brigham and Women's Hospital
  2. Peter Behringer :: Brigham and Women's Hospital
  3. Mikael Brudfors :: Charles III University of Madrid
  4. Laurent Chauvin :: Brigham and Women's Hospital
  5. Xiao Da :: Massachusetts General Hospital
  6. Arnaud de Bruecker :: Ecole supérieure d'informatique
  7. Caroline Essert :: University of Strasbourg
  8. Andriy Fedorov :: Brigham and Women's Hospital
  9. Sara Fernandez Vidal :: ICM
  10. David García :: Charles III University of Madrid
  11. Jorge García :: Technical University of Madrid
  12. Guido Gerig :: University of Utah
  13. Alvaro Gomez :: University of the Republic of Uruguay
  14. Ali Gottschal :: Ecole supérieure d'informatique
  15. Nobuhiko Hata :: Brigham and Women's Hospital
  16. Alfredo Higueras :: Galgo Medical
  17. Matthew Holden :: Queen's University
  18. Jayender Jagadeesan :: Brigham and Women's Hospital
  19. Laszlo Kanyasi :: Queen's University
  20. Tina Kapur :: Brigham and Women's Hospital
  21. Ron Kikinis :: Brigham and Women's Hospital
  22. Franklin King :: Queen's University
  23. Andras Lasso :: Queen's University
  24. Eugenio Marinetto :: Charles III University of Madrid
  25. Yves Martelli :: Galgo Medical
  26. Clara Meinzer :: Semmelweis University
  27. J. Jesus Montufar :: Universidad Autonoma del Estado de Mexico
  28. Jorge Onieva :: Brigham and Women's Hospital
  29. Michael Onken :: Open Connections
  30. Robert H. Owen :: BK Medical ApS
  31. Utsav Pardasani :: Robarts Research Institute
  32. Javier Pascau :: Charles III University of Madrid
  33. Tobias Penzkofer :: Charité Berlin Germany
  34. Steve Pieper :: Isomics, Inc.
  35. Giampaolo Pileggi :: Magna Graecia University
  36. Frank Preiswerk :: Brigham and Women's Hospital
  37. Sonia Pujol :: Brigham and Women's Hospital
  38. Davide Punzo :: University of Groningen
  39. Adam Rankin :: Robarts Research Institute
  40. Nicolas Rannou :: Boston Children's Hospital
  41. Marcelo Romero :: Universidad Autonoma del Estado de Mexico
  42. Raul San Jose Estepar :: Brigham and Women's Hospital
  43. Laura Sanz :: Charles III University of Madrid
  44. Salvatore Scaramuzzino :: Magna Graecia University
  45. Tsotne Shonia :: Ecole supérieure d'informatique
  46. Sebastian Tauscher :: Leibniz Universität Hannover
  47. Christophe Teixeira Pereira :: Ecole supérieure d'informatique
  48. Clare Tempany :: Brigham and Women's Hospital
  49. Matthew Toews :: Ecole de Technologie Superieure
  50. Angel Torrado-Carvajal :: King Juan Carlos University
  51. Tamas Ungi :: Queen's University
  52. Sandy Wells :: Brigham and Women's Hospital
  53. Paolo Zaffino :: Magna Græcia University of Catanzaro
  54. Yulong Zhao :: University of Rennes
  55. Dženan Zukić :: Kitware, Inc.