Difference between revisions of "2016 Winter Project Week"

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__NOTOC__
 
__NOTOC__
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Back to [[Events]]
 +
 
[[image:PW-MIT2016.png|300px]]
 
[[image:PW-MIT2016.png|300px]]
  
'''Dates:''' January 4-8, 2016
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[[image:2016_Winter_Project_Week_Final_Day.JPG|1200px]]
  
'''Location:''' [https://www.google.com/maps/place/MIT:+Computer+Science+and+Artificial+Intelligence+Laboratory/@42.361864,-71.090563,16z/data=!4m2!3m1!1s0x0:0x303ada1e9664dfed?hl=en MIT CSAIL], Cambridge, MA. (Rooms: [[MIT_Project_Week_Rooms#Kiva|Kiva]], R&D)
+
=Welcome to the web page for the 22nd Project Week!=
 +
==Summary==
 +
The 22nd PROJECT EVENT was held on January 4-8, 2016 at MIT. It recorded 77 registered attendees, who worked on 47 projects. These attendees represented 17 academic sites (MIT, Brigham and Women’s Hospital, , École de Technologie Supérieure, (Canada), Massachusetts General Hospital, Queen’s University (Canada), Robarts Research Institute (Canada), University of Michigan, Montreal Neurosurgical Institute, Dana-Farber Cancer Institute, Boston, DKFZ - Heidelberg Cancer Research Center, JHU, University of Iowa, UNC Chapel Hill, WPI, Children's National Medical Center Washington DC, Harvard IAIC, University of Colorado at Colorado Springs (UCCS), and 8 companies (Kitware, Isomics Inc, GE, Philips Research, MEVIS, HealthMyne, KnowledgeVis, SINTEF).
  
'''REGISTRATION:''' Register [https://www.regonline.com/namic16 here].
+
A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
<br>
+
 
 +
==Logistics==
 +
*'''Dates:''' January 4-8, 2016
 +
*'''Location:''' [https://www.google.com/maps/place/MIT:+Computer+Science+and+Artificial+Intelligence+Laboratory/@42.361864,-71.090563,16z/data=!4m2!3m1!1s0x0:0x303ada1e9664dfed?hl=en MIT CSAIL], Cambridge, MA. (Rooms: [[MIT_Project_Week_Rooms#Kiva|Kiva]], R&D)
 +
*'''REGISTRATION:''' Register [https://www.regonline.com/namic16 here].
  
 
== Introduction ==
 
== Introduction ==
 
Founded  in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built  using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.  
 
Founded  in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built  using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.  
  
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws 80-120 researchers. As of August 2014, it is a [http://www.miccai.org/organization MICCAI] endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.  
+
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws 60-120 researchers. As of August 2014, it is a [http://www.miccai.org/organization MICCAI] endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.  
  
 
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.
 
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.
  
 
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], and [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO].  
 
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], and [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO].  
 
A summary of all previous Project Events is available [[Project_Events#Past|here]].
 
  
 
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.
 
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.
  
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
+
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week NA-MIC Project Week mailing list].
  
 
==Agenda==
 
==Agenda==
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'''10:00-11:30am:''' Breakout Session: [[2016_Winter_Project_Week/Breakout_Sessions/SlicerForMedicalRoboticsResearch| Slicer for Medical Robotics Research]]
 
'''10:00-11:30am:''' Breakout Session: [[2016_Winter_Project_Week/Breakout_Sessions/SlicerForMedicalRoboticsResearch| Slicer for Medical Robotics Research]]
 
<br>
 
<br>
|'''8:30-9:30am''' [[2016_Winter_Project_Week/Breakout_Sessions/IGT#Image-guided Breast Surgery| MR, US, Mass Spect guided Breast Surgery]]  (Melissa Mallory, Nathalie Agar, Gabrielle Gauvin, Andras Lasso) <br>
+
|'''8:30-9:30am''' MR, US, Mass Spect guided Breast Surgery (Melissa Mallory, Nathalie Agar, Gabrielle Gauvin, Andras Lasso) <br>
'''9:30-10:30am''' [[2016_Winter_Project_Week/Breakout_Sessions/IGT#Image-guided Neurosurgery| Clinical perspective on Image Guided Neurosurgery]]  (Alexandra Golby) <br>
+
'''9:30-10:30am''' Clinical perspective on Image Guided Neurosurgery (Alexandra Golby) <br>
'''10:30-11:30am''' [[2016_Winter_Project_Week/Breakout_Sessions/IGT#Multiparametric MRI| Clinical perspective on Multiparametric MRI]] (Fiona Fennessy)<br>
+
'''10:30-11:30am''' Clinical perspective on Multiparametric MRI (Fiona Fennessy)<br>
'''11:30am-12pm''' [[2016_Winter_Project_Week/Breakout_Sessions/IGT#Drug Delivery to Brain|Drug Delivery to Brain]] <br>
+
'''11:30am-12pm''' Drug Delivery to Brain (Jason White) <br>
 
|'''10:00am-12:00pm:''' [[#Projects|Project Progress Updates]]<br>  
 
|'''10:00am-12:00pm:''' [[#Projects|Project Progress Updates]]<br>  
 
[[MIT_Project_Week_Rooms#Kiva|Kiva]]
 
[[MIT_Project_Week_Rooms#Kiva|Kiva]]
 
<br>-----------------<br>
 
<br>-----------------<br>
'''12pm:''' [[Events:TutorialContestJanuary2016|Tutorial Contest Winner Announcement]]<br>  
+
'''12pm:''' [[Winter2016TutorialContest|Tutorial Contest Winner Announcement]]<br>  
 
[[MIT_Project_Week_Rooms#Kiva|Kiva]]
 
[[MIT_Project_Week_Rooms#Kiva|Kiva]]
 
|-
 
|-
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'''3:00-4:30pm:''' Breakout Session:[[2016_Winter_Project_Week/Breakout_Sessions/QIICRTools| QIICR Tools]]
 
'''3:00-4:30pm:''' Breakout Session:[[2016_Winter_Project_Week/Breakout_Sessions/QIICRTools| QIICR Tools]]
 
|'''1:00-3:00pm:''' Breakout Session:[[2016_Winter_Project_Week/Breakout_Session/What's_Planned_for_Slicer_Core|What's Planned for Slicer Core]]<br>
 
|'''1:00-3:00pm:''' Breakout Session:[[2016_Winter_Project_Week/Breakout_Session/What's_Planned_for_Slicer_Core|What's Planned for Slicer Core]]<br>
[[MIT_Project_Week_Rooms#Kiva|Kiva]]  
+
[[MIT_Project_Week_Rooms#Kiva|Kiva]] <br>
|
+
'''3:30-5:00pm:''' Breakout Session: [[Events:TutorialContestJanuary2016 |2016 Tutorial Contest Review (Kiva)]]
 +
| [[AMIGO Tours#Project Week 22|AMIGO Tour]]
 
|-
 
|-
 
|bgcolor="#ffffdd"|'''5:30pm'''
 
|bgcolor="#ffffdd"|'''5:30pm'''
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|bgcolor="#f0e68b"|Adjourn for the day
 
|bgcolor="#f0e68b"|Adjourn for the day
 
|bgcolor="#f0e68b"|Adjourn for the day
 
|bgcolor="#f0e68b"|Adjourn for the day
|bgcolor="#f0e68b"|Adjourn for the day
+
|bgcolor="#f0e68b"|Adjourn for the day <br> (Optional) [[2016_Winter_Project_Week/Dinner|Dinner on Thursday Night]]
 
|
 
|
 
|}
 
|}
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*Use this [[2016_Project_Week_Template | Updated Template for project pages]]
 
*Use this [[2016_Project_Week_Template | Updated Template for project pages]]
  
== IGT ==
+
== IGT ==  
 
* [[2016_Winter_Project_Week/Projects/SlicerROSIntegration | 3D Slicer + ROS Integration]] (Junichi Tokuda, Axel Krieger, Simon Leonard, Jayender Jagadeesan)
 
* [[2016_Winter_Project_Week/Projects/SlicerROSIntegration | 3D Slicer + ROS Integration]] (Junichi Tokuda, Axel Krieger, Simon Leonard, Jayender Jagadeesan)
 
* [[2016_Winter_Project_Week/Projects/External_beam_planning | External Beam Radiotherapy Planning]] (Greg Sharp, others)
 
* [[2016_Winter_Project_Week/Projects/External_beam_planning | External Beam Radiotherapy Planning]] (Greg Sharp, others)
 
* [[2016_Winter_Project_Week/Projects/CryoPlanningSlicerModule | CryoPlanning Module in Slicer]] (Jayender Jagadeesan, Steve Pieper, Sandy Wells)
 
* [[2016_Winter_Project_Week/Projects/CryoPlanningSlicerModule | CryoPlanning Module in Slicer]] (Jayender Jagadeesan, Steve Pieper, Sandy Wells)
* [[2016_Winter_Project_Week/Projects/TrackedUltrasoundStandardization | Tracked Ultrasound Standardization]] (Andras Lasso, Christian Askeland, Simon Drouin, Junichi Tokuda, Steve Pieper, Adam Rankin)
+
* [[2016_Winter_Project_Week/Projects/TrackedUltrasoundStandardization | Tracked Ultrasound Standardization]] (Andras Lasso, Christian Askeland, Simon Drouin, Junichi Tokuda, Steve Pieper, Adam Rankin, Thomas Kirchner, Janek Groehl)
 
*[[2016_Winter_Project_Week/Projects/IntegrationCustusX|Integration of CustusX with PLUS on BK System]] (Christian A, Andras Lasso, Adam Rankin)
 
*[[2016_Winter_Project_Week/Projects/IntegrationCustusX|Integration of CustusX with PLUS on BK System]] (Christian A, Andras Lasso, Adam Rankin)
 
*[[2016_Winter_Project_Week/Projects/MITK_Plus_Integration | Integration of Plus and MITK]] (Thomas Kirchner, Janek Groehl)
 
*[[2016_Winter_Project_Week/Projects/MITK_Plus_Integration | Integration of Plus and MITK]] (Thomas Kirchner, Janek Groehl)
 
*[[2016_Winter_Project_Week/Projects/IntegrationImFusion| Integration of ImFusion MR-US Registration with BWH AMIGO Neurosurgery Setup]] (Sarah Frisken, Tina Kapur, Steve Pieper, Sandy Wells, Andras Lasso, Christian Askelan)
 
*[[2016_Winter_Project_Week/Projects/IntegrationImFusion| Integration of ImFusion MR-US Registration with BWH AMIGO Neurosurgery Setup]] (Sarah Frisken, Tina Kapur, Steve Pieper, Sandy Wells, Andras Lasso, Christian Askelan)
* [[2016_Winter_Project_Week/Projects/PLUS | Improvement of PLUS communication with Slicer]] (Adam Rankin)
+
* [[2016_Winter_Project_Week/Projects/PLUS | Improvement of PLUS communication with Slicer (skip, see US standardization)]] (Adam Rankin)
* [[2016_Winter_Project_Week/Projects/SliceTracker | Prostate motion tracking and navigation in Slicer ]] (Christian Herz, Andrey Fedorov)
+
* [[2016_Winter_Project_Week/Projects/SliceTracker | Prostate motion tracking and navigation in Slicer ]] (Christian Herz, Andrey Fedorov, Andras Lasso)
 
* [[2016_Winter_Project_Week/Projects/EVD |Measuring Anatomic Factors for Extraventricular Drain Placement]] (Kirby Vosburgh, P. Jason White)
 
* [[2016_Winter_Project_Week/Projects/EVD |Measuring Anatomic Factors for Extraventricular Drain Placement]] (Kirby Vosburgh, P. Jason White)
 
* [[2016_Winter_Project_Week/Projects/GABA_Delivery |Localized GABA delivery via BBB disruption]] (Nick Todd)
 
* [[2016_Winter_Project_Week/Projects/GABA_Delivery |Localized GABA delivery via BBB disruption]] (Nick Todd)
Line 134: Line 141:
  
 
==Image Analysis==
 
==Image Analysis==
 +
* [[2016_Winter_Project_Week/Projects/CongenitalHeart | Interactive patch-based segmentation for congenital heart disease]] (Danielle Pace, Adrian Dalca, Polina Golland)
 
* [[2016_Winter_Project_Week/Projects/ImageRestoration | Image Restoration via Patch GMMs]] (Adrian Dalca, Katie Bouman, Polina Golland)
 
* [[2016_Winter_Project_Week/Projects/ImageRestoration | Image Restoration via Patch GMMs]] (Adrian Dalca, Katie Bouman, Polina Golland)
 
* [[2016_Winter_Project_Week/Projects/PatchRegistration | Patch Based Discrete Registration for Difficult Images]] (Adrian Dalca, Andreea Bobu, Polina Golland)
 
* [[2016_Winter_Project_Week/Projects/PatchRegistration | Patch Based Discrete Registration for Difficult Images]] (Adrian Dalca, Andreea Bobu, Polina Golland)
 
* [[2016_Winter_Project_Week/Projects/SphericalWaveletShapeAnalysis|Spherical Wavelet Shape Analysis]] (Yi Gao, Erich Bremer, Allen Tannenbaum, Ron Kikinis)
 
* [[2016_Winter_Project_Week/Projects/SphericalWaveletShapeAnalysis|Spherical Wavelet Shape Analysis]] (Yi Gao, Erich Bremer, Allen Tannenbaum, Ron Kikinis)
* [[2016_Winter_Project_Week/Projects/DigitalPathologyNuclearSegmentation|Digital Pathology Nuclear Segmentation]] (Erich Bremer, Kelli Xu, Yi Gao, Nicole Aucoin, Andrey Fedorov)
+
* [[2016_Winter_Project_Week/Projects/DigitalPathologyNuclearSegmentation|Digital Pathology Nuclear Segmentation]] (Erich Bremer, Yi Gao, Nicole Aucoin, Andrey Fedorov)
 
* [[2016_Winter_Project_Week/Projects/SlicerCMFNextSteps | Moving beyond SlicerCMF and Future Projects]] (Beatriz Paniagua, Lucia Cevidanes, Steve Pieper, Juan Prieto)
 
* [[2016_Winter_Project_Week/Projects/SlicerCMFNextSteps | Moving beyond SlicerCMF and Future Projects]] (Beatriz Paniagua, Lucia Cevidanes, Steve Pieper, Juan Prieto)
 
*[[2016_Winter_Project_Week/Projects/ChestImagingPlatform|Chest Imaging Platform: COPD and Other Pulmonary Diseases]] (Raúl San José, Jorge Onieva, James Ross)
 
*[[2016_Winter_Project_Week/Projects/ChestImagingPlatform|Chest Imaging Platform: COPD and Other Pulmonary Diseases]] (Raúl San José, Jorge Onieva, James Ross)
Line 144: Line 152:
 
* [[2016_Winter_Project_Week/Projects/BatchImageAnalysis  | Batch Clinical Image Analysis]] (Sandy Wells, Kalli Retzepi, Yangming Ou, Matt Toews, Steve Pieper, Randy Gollub)
 
* [[2016_Winter_Project_Week/Projects/BatchImageAnalysis  | Batch Clinical Image Analysis]] (Sandy Wells, Kalli Retzepi, Yangming Ou, Matt Toews, Steve Pieper, Randy Gollub)
 
* [[2016_Winter_Project_Week/Projects/SlicerOpenCVExtension | Slicer OpenCV Extension]] (Nicole Aucoin, Erich Bremer, Andrey Fedorov)
 
* [[2016_Winter_Project_Week/Projects/SlicerOpenCVExtension | Slicer OpenCV Extension]] (Nicole Aucoin, Erich Bremer, Andrey Fedorov)
* [[2016_Winter_Project_Week/Projects/Interactive4DSegmentation | Interactive 4D Segmentation Module]] (Ethan Ulrich, Andrey Fedorov)
+
* [[2016_Winter_Project_Week/Projects/Interactive4DSegmentation | Interactive 4D Segmentation Module]] (Ethan Ulrich, Andrey Fedorov, Andras Lasso)
* [[2016_Winter_Project_Week/Projects/CongenitalHeart | Interactive patch-based segmentation for congenital heart disease]] (Danielle Pace, Adrian Dalca, Polina Golland)
 
 
* [[2016_Winter_Project_Week/Projects/DSCAnalysis | Dynamic Susceptibility Contrast (DSC) MRI Analysis]] (Xiao Da, Yangming Ou, Andriy Fedorov, Steve Pieper, Jayashree Kalpathy-Cramer)
 
* [[2016_Winter_Project_Week/Projects/DSCAnalysis | Dynamic Susceptibility Contrast (DSC) MRI Analysis]] (Xiao Da, Yangming Ou, Andriy Fedorov, Steve Pieper, Jayashree Kalpathy-Cramer)
  
Line 164: Line 171:
 
* [[2016_Winter_Project_Week/Projects/Data Persisting | Mechanism to Persist Clinical User Data from Different Modules Based on SQLite and/or other Database Engines ]] (Raúl San José, Jorge Onieva)
 
* [[2016_Winter_Project_Week/Projects/Data Persisting | Mechanism to Persist Clinical User Data from Different Modules Based on SQLite and/or other Database Engines ]] (Raúl San José, Jorge Onieva)
 
* [[2016_Winter_Project_Week/Projects/Workflows | Workflow Module that Enables the Navigation and Data Sharing between Different Modules in a Clinical Workflow ]] (Raúl San José, Jorge Onieva)
 
* [[2016_Winter_Project_Week/Projects/Workflows | Workflow Module that Enables the Navigation and Data Sharing between Different Modules in a Clinical Workflow ]] (Raúl San José, Jorge Onieva)
 +
* [[2016_Winter_Project_Week/Projects/CondaSlicer | Integration of Anaconda Python in Slicer]] (JC, Raúl San José, Jorge Onieva, Slicer Community?)
 
* [[2016_Winter_Project_Week/Projects/AIMInteroperability | AIM for Interoperability]] (Hans Meine, Andrey Fedorov, ??)
 
* [[2016_Winter_Project_Week/Projects/AIMInteroperability | AIM for Interoperability]] (Hans Meine, Andrey Fedorov, ??)
* [[2016_Winter_Project_Week/Projects/PLUSOCR | Exploration of open-source OCR libraries for device meta-data capture without research interface ]] (Adam Rankin)
 
 
* [[2016_Winter_Project_Week/Projects/SlicerEnhancedMR | Developing support for Enhanced MR in Slicer]] (Michael Onken, Andrey Fedorov)
 
* [[2016_Winter_Project_Week/Projects/SlicerEnhancedMR | Developing support for Enhanced MR in Slicer]] (Michael Onken, Andrey Fedorov)
 
* [[2016_Winter_Project_Week/Projects/CLIImprovement| Improve CLI robustness and testing]] (Johan Andruejol)
 
* [[2016_Winter_Project_Week/Projects/CLIImprovement| Improve CLI robustness and testing]] (Johan Andruejol)
 +
* [[2016_Winter_Project_Week/Projects/ExploringCollaborationVisualization| Exploring a collaboration in visualization]] (SK Semwal)
  
 
= '''Logistics''' =
 
= '''Logistics''' =
Line 181: Line 189:
 
Do not add your name to this list - it is maintained by the organizers based on your paid registration.  To register, visit this [https://www.regonline.com/namic16  registration site].
 
Do not add your name to this list - it is maintained by the organizers based on your paid registration.  To register, visit this [https://www.regonline.com/namic16  registration site].
  
 
+
# Nathalie Agar :: Brigham and Women's Hospital
#Polina Golland, MIT
+
# Peter Anderson :: Retired
#Ron Kikinis, BWH
+
# Johan Andruejol :: Kitware, Inc.
#Nicole Aucoin, BWH/SPL
+
# Christian Askeland :: SINTEF
#Peter Anderson
+
# Nicole Aucoin :: Brigham and Women's Hospital
#Daniel Blezek, Isomics, Inc.
+
# Daniel Blezek :: Isomics, Inc.
#Lucia Cevidanes, University of Michigan
+
# Erich Bremer :: Stony Brook University
#Adrian Dalca, MIT
+
# Katharine Carter :: Brigham and Women's Hospital
#Simon Drouin, Montreal Neurological Institute
+
# Lucia Cevidanes :: University of Michigan
#Janek Groehl, German Cancer Research Center
+
# Ye Cheng :: Brigham and Women's Hospital
#Tina Kapur, BWH/HMS
+
# Xiao Da :: Massachusetts General Hospital
#Thomas Kirchner, German Cancer Research Center
+
# Adrian Dalca :: Massachusetts Institute of Technology
#Hans Meine, University of Bremen/MEVIS
+
# Valentin Demeusy :: Brigham and Women's Hospital
#Vivek Narayan, Dana Farber Cancer Institute
+
# Sean Doyle :: Massachusetts General Hospital
#Danielle Pace, MIT
+
# Simon Drouin :: Montreal Neurological Institute
#Laura Pascal, University of Michigan
+
# Andriy Fedorov :: Brigham and Women's Hospital
#Steve Pieper, Isomics, Inc.
+
# Jean-Christophe Fillion-Robin :: Kitware, Inc.
#Csaba Pinter, Queen's University
+
# Tobias Frank :: Leibniz Universität Hannover
#Gregory Sharp, MGH
+
# Sarah Frisken :: Brigham and Women's Hospital
#James Miller, GE Research
+
# Yi Gao :: Stony Brook University
#Kyle Sunderland, Queen's University
+
# David Gering :: HealthMyne
#Ethan Ulrich, University of Iowa
+
# Daniel Glazer :: Brigham and Women's Hospital
#Jean-Baptiste Vimort, University of Michigan
+
# Polina Golland :: Massachusetts Institute of Technology
#Miaomiao Zhang, MIT
+
# Randy Gollub :: Massachusetts General Hospital
#Beatriz Paniagua, University of North Carolina at Chapel Hill
+
# Janek Groehl :: German Cancer Research Center
#Sonia Pujol, BWH
+
# Michael Halle :: Brigham and Women's Hospital
#Junichi Tokuda, BWH
+
# Nobuhiko Hata :: Brigham and Women's Hospital
#Katie Mastrogiacomo, BWH
+
# Christian Herz :: Brigham and Women's Hospital
#Niravkumar Patel, Worcester Polytechnic Institute
+
# Jayender Jagadeesan :: Brigham and Women's Hospital
#Michael Onken, Open Connections (Germany)
+
# Ameet Jain :: Phillips Research
#Erich Bremer, Stony Brook University
+
# Pegah Kahali :: Brigham and Women's Hospital
#Xiao Da, MGH
+
# Jayashree Kalpathy-Cramer :: Massachusetts General Hospital
#Tobias Frank, Leibniz Universität Hannover
+
# Tina Kapur :: Brigham and Women's Hospital
#Kirby Vosburgh, BWH
+
# Ron Kikinis :: Brigham and Women's Hospital
#P. Jason White, BWH
+
# Thomas Kirchner :: German Cancer Research Center
#Lauren O'Donnell, BWH
+
# Axel Krieger :: Children's National Medical Center
#Pegah Kahali, BWH
+
# Andras Lasso :: Queen's University
#Fan Zhang, BWH
+
# Simon Leoard :: Johns Hopkins University
#Adam Rankin, Robarts Research Institute
+
# Curtis Lisle :: KnowledgeVis, LLC
#Simon Leoard, Johns Hopkins University
+
# Melissa Mallory :: Brigham and Women's Hospital
#David Gering, HealthMyne
+
# Katie Mastrogiacomo :: Brigham and Women's Hospital
#Johan Andruejol, Kitware
+
# Hans Meine :: Fraunhofer MEVIS, Bremen
#Jean-Christophe Fillion-Robin, Kitware
+
# James Miller :: General Electric
#Kelli Xu, MIT
+
# Vivek Narayan :: Dana Farber Cancer Institute
#Christian Askeland, SINTEF
+
# Isaiah Norton :: Brigham and Women's Hospital
#Katharine Carter, BWH
+
# Lauren O'Donnell :: Brigham and Women's Hospital
#Nick Todd, BWH
+
# Jorge Onieva :: Brigham and Women's Hospital
#Ye Cheng, BWH
+
# Michael Onken :: Open Connections
#Andriy Fedorov, BWH/HMS
+
# Danielle Pace :: Massachusetts Institute of Technology
#Sudhanshu Semwal, UCCS Professor
+
# Beatriz Paniagua :: University of North Carolina
#Michael Halle, BWH
+
# Laura Pascal :: University of Michigan
#Kallirroi Retzepi, MGH
+
# Nirav Patel :: Worcester Polytechnic Institute
#Jayender Jagadeesan, BWH
+
# Steve Pieper :: Isomics, Inc.
#Nathalie Agar, BWH
+
# Csaba Pinter :: Queen's University
#Curtis Lisle, KnowledgeVis, LLC
+
# Stuart Pomerantz :: Massachusetts General Hospital
#Andras Lasso, PerkLab, Queen's University
+
# Sonia Pujol :: Brigham and Women's Hospital
#Sarah Frisken, BWH
+
# Adam Rankin :: Robarts Research Institute
#Yi Gao, Stony Brook University
+
# Kallirroi Retzepi :: Massachusetts General Hospital
#Christian Herz, BWH
+
# James Ross :: Brigham and Women's Hospital
#Prashin Unadkat, SPL/BWH
+
# Raul San Jose Estepar :: Brigham and Women's Hospital
#Jorge Onieva, BWH
+
# Sudhanshu Semwal :: University of Colorado, Colorado Springs
#James Ross, BWH
+
# Gregory Sharp :: Massachusetts General Hospital
#Raul SanJose, BWH
+
# Utsav Soni :: Brigham and Women's Hospital
#Jayashree Kalpathy-Cramer, MGH/HMS
+
# Kyle Sunderland :: Queen's University
#Daniel Glazer, BWH
+
# Nick Todd :: Brigham and Women's Hospital
#Valentin Demeusy, SPL Intern
+
# Matthew Toews :: Ecole de Technologie Superieure
#Ameet Jain, Phillips Research
+
# Junichi Tokuda :: Brigham and Women's Hospital
#Utsav Soni, BWH
+
# Ethan Ulrich :: University of Iowa
#Matthew Toews, Ecole de Technologie Superieure
+
# Prashin Unadkat :: Brigham and Women's Hospital
#Isaiah Norton, BWH
+
# Jean-Baptiste Vimort :: University of Michigan
#Sean Doyle, MGH
+
# Kirby Vosburgh :: Brigham and Women's Hospital
#Stuart Pomerantz, MGH
+
# Carl-Fredrik Westin :: Brigham and Women's Hospital
#Randy Gollub, MGH
+
# Jason White :: Brigham and Women's Hospital
#Melissa Mallory, BWH
+
# Kelli Xu :: Massachusetts Institute of Technology
#Axel Krieger, Children's National Medical Center
+
# Terry Yoo :: National Library of Medicine
#Nobuhiko Hata, BWH
+
# Fan Zhang :: Brigham and Women's Hospital
 +
# Miaomiao Zhang :: Massachusetts Institute of Technology

Latest revision as of 15:50, 30 March 2017

Home < 2016 Winter Project Week

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PW-MIT2016.png

2016 Winter Project Week Final Day.JPG

Welcome to the web page for the 22nd Project Week!

Summary

The 22nd PROJECT EVENT was held on January 4-8, 2016 at MIT. It recorded 77 registered attendees, who worked on 47 projects. These attendees represented 17 academic sites (MIT, Brigham and Women’s Hospital, , École de Technologie Supérieure, (Canada), Massachusetts General Hospital, Queen’s University (Canada), Robarts Research Institute (Canada), University of Michigan, Montreal Neurosurgical Institute, Dana-Farber Cancer Institute, Boston, DKFZ - Heidelberg Cancer Research Center, JHU, University of Iowa, UNC Chapel Hill, WPI, Children's National Medical Center Washington DC, Harvard IAIC, University of Colorado at Colorado Springs (UCCS), and 8 companies (Kitware, Isomics Inc, GE, Philips Research, MEVIS, HealthMyne, KnowledgeVis, SINTEF).

A summary of all past Project Events.

Logistics

  • Dates: January 4-8, 2016
  • Location: MIT CSAIL, Cambridge, MA. (Rooms: Kiva, R&D)
  • REGISTRATION: Register here.

Introduction

Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, built using VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.

Project Week is a semi-annual event which draws 60-120 researchers. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, and OCAIRO.

This project week is an event endorsed by the MICCAI society.

Please make sure that you are on the NA-MIC Project Week mailing list.

Agenda

Time Monday, January 4 Tuesday, January 5 Wednesday, January 6 Thursday, January 7 Friday, January 8
Project Presentations Work on Projects Work on Projects IGT Day Reporting Day
8:30am Breakfast Breakfast Breakfast Breakfast
9:00am-12:00pm 10:30am-12pm: [Tutorial] Diffeomorphic registration and geodesic shooting methods (I). (Sarang Joshi)
Room: 32-D507.
10:00-11:30am: Breakout Session: Slicer Extensions Birds of a Feather

10:00-11:30am: Breakout Session: Slicer for Medical Robotics Research

8:30-9:30am MR, US, Mass Spect guided Breast Surgery (Melissa Mallory, Nathalie Agar, Gabrielle Gauvin, Andras Lasso)

9:30-10:30am Clinical perspective on Image Guided Neurosurgery (Alexandra Golby)
10:30-11:30am Clinical perspective on Multiparametric MRI (Fiona Fennessy)
11:30am-12pm Drug Delivery to Brain (Jason White)

10:00am-12:00pm: Project Progress Updates

Kiva
-----------------
12pm: Tutorial Contest Winner Announcement
Kiva

12:00pm-1:00pm Lunch Lunch Lunch Lunch Lunch boxes; Adjourn by 1:30pm
1:00-5:30pm 1:00pm-1:05pm: Welcome

Kiva
-----------------
1:05-2:30pm: Project Introductions (all Project Leads)
Kiva
-----------------
2:45-4:00pm: Breakout Session: Ultrasound
Kiva
-----------------

4:00-5:30pm: [Tutorial] Diffeomorphic registration geodesic shooting methods (II). (Sarang Joshi)
Room: 32-D507.

1:00-2:30pm: Breakout Session: Diffusion MRI

Kiva
3:00-4:30pm: Breakout Session: QIICR Tools

1:00-3:00pm: Breakout Session:What's Planned for Slicer Core

Kiva
3:30-5:00pm: Breakout Session: 2016 Tutorial Contest Review (Kiva)

AMIGO Tour
5:30pm Adjourn for the day Adjourn for the day Adjourn for the day Adjourn for the day
(Optional) Dinner on Thursday Night

Calendar

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iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

Projects

IGT

Tractography

Image Analysis

Infrastructure

Logistics

  • Dates: January 4-8, 2016
  • Location: MIT, Kiva Conference room; 4th floor of Building 32.
  • REGISTRATION: Register here. Registration Fee: $300.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Room sharing: If interested, add your name to the list here

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this registration site.

  1. Nathalie Agar :: Brigham and Women's Hospital
  2. Peter Anderson :: Retired
  3. Johan Andruejol :: Kitware, Inc.
  4. Christian Askeland :: SINTEF
  5. Nicole Aucoin :: Brigham and Women's Hospital
  6. Daniel Blezek :: Isomics, Inc.
  7. Erich Bremer :: Stony Brook University
  8. Katharine Carter :: Brigham and Women's Hospital
  9. Lucia Cevidanes :: University of Michigan
  10. Ye Cheng :: Brigham and Women's Hospital
  11. Xiao Da :: Massachusetts General Hospital
  12. Adrian Dalca :: Massachusetts Institute of Technology
  13. Valentin Demeusy :: Brigham and Women's Hospital
  14. Sean Doyle :: Massachusetts General Hospital
  15. Simon Drouin :: Montreal Neurological Institute
  16. Andriy Fedorov :: Brigham and Women's Hospital
  17. Jean-Christophe Fillion-Robin :: Kitware, Inc.
  18. Tobias Frank :: Leibniz Universität Hannover
  19. Sarah Frisken :: Brigham and Women's Hospital
  20. Yi Gao :: Stony Brook University
  21. David Gering :: HealthMyne
  22. Daniel Glazer :: Brigham and Women's Hospital
  23. Polina Golland :: Massachusetts Institute of Technology
  24. Randy Gollub :: Massachusetts General Hospital
  25. Janek Groehl :: German Cancer Research Center
  26. Michael Halle :: Brigham and Women's Hospital
  27. Nobuhiko Hata :: Brigham and Women's Hospital
  28. Christian Herz :: Brigham and Women's Hospital
  29. Jayender Jagadeesan :: Brigham and Women's Hospital
  30. Ameet Jain :: Phillips Research
  31. Pegah Kahali :: Brigham and Women's Hospital
  32. Jayashree Kalpathy-Cramer :: Massachusetts General Hospital
  33. Tina Kapur :: Brigham and Women's Hospital
  34. Ron Kikinis :: Brigham and Women's Hospital
  35. Thomas Kirchner :: German Cancer Research Center
  36. Axel Krieger :: Children's National Medical Center
  37. Andras Lasso :: Queen's University
  38. Simon Leoard :: Johns Hopkins University
  39. Curtis Lisle :: KnowledgeVis, LLC
  40. Melissa Mallory :: Brigham and Women's Hospital
  41. Katie Mastrogiacomo :: Brigham and Women's Hospital
  42. Hans Meine :: Fraunhofer MEVIS, Bremen
  43. James Miller :: General Electric
  44. Vivek Narayan :: Dana Farber Cancer Institute
  45. Isaiah Norton :: Brigham and Women's Hospital
  46. Lauren O'Donnell :: Brigham and Women's Hospital
  47. Jorge Onieva :: Brigham and Women's Hospital
  48. Michael Onken :: Open Connections
  49. Danielle Pace :: Massachusetts Institute of Technology
  50. Beatriz Paniagua :: University of North Carolina
  51. Laura Pascal :: University of Michigan
  52. Nirav Patel :: Worcester Polytechnic Institute
  53. Steve Pieper :: Isomics, Inc.
  54. Csaba Pinter :: Queen's University
  55. Stuart Pomerantz :: Massachusetts General Hospital
  56. Sonia Pujol :: Brigham and Women's Hospital
  57. Adam Rankin :: Robarts Research Institute
  58. Kallirroi Retzepi :: Massachusetts General Hospital
  59. James Ross :: Brigham and Women's Hospital
  60. Raul San Jose Estepar :: Brigham and Women's Hospital
  61. Sudhanshu Semwal :: University of Colorado, Colorado Springs
  62. Gregory Sharp :: Massachusetts General Hospital
  63. Utsav Soni :: Brigham and Women's Hospital
  64. Kyle Sunderland :: Queen's University
  65. Nick Todd :: Brigham and Women's Hospital
  66. Matthew Toews :: Ecole de Technologie Superieure
  67. Junichi Tokuda :: Brigham and Women's Hospital
  68. Ethan Ulrich :: University of Iowa
  69. Prashin Unadkat :: Brigham and Women's Hospital
  70. Jean-Baptiste Vimort :: University of Michigan
  71. Kirby Vosburgh :: Brigham and Women's Hospital
  72. Carl-Fredrik Westin :: Brigham and Women's Hospital
  73. Jason White :: Brigham and Women's Hospital
  74. Kelli Xu :: Massachusetts Institute of Technology
  75. Terry Yoo :: National Library of Medicine
  76. Fan Zhang :: Brigham and Women's Hospital
  77. Miaomiao Zhang :: Massachusetts Institute of Technology