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Back to [[Events]]
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__NOTOC__
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Back to [[Events]]
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[[image:PW-MIT2013.png|300px]]
 
[[image:PW-MIT2013.png|300px]]
  
Dates: June 17-21, 2013.
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=Welcome to the web page for the 17th Project Week!=
  
Location: MIT, Cambridge, MA.
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<gallery widths="800px" heights="300px" perrow="1" caption="Lunch in the Amphitheater at the Stata Building, June 20, 2013.">
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Image:Lunch at Project week IMG 0367.JPG|Shade was a popular commodity.
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</gallery>
  
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==Summary==
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The 17th PROJECT EVENT was held on June 17-21, 2013 at MIT. It recorded 104 registered attendees, who worked on 75 projects. These attendees represented 22 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, Boston Children’s Hospital, MIT, WPI, WIT, University of Alabama, Rochester Institute of Technology, University of Utah, University of Iowa, University of Michigan, UCLA, Rutgers University, University del Estado de Mexico,  Ecole Polytechnique Federale de Lausanne, Zhejiang University of Technology, Queen’s University, University of Sydney, University of Western Australia, University Sao Paulo, Leibniz University, Hannover, University Magna Graecia of Catanzaro) and 13 companies (NIRAL-UNC, Radnostics, GE Healthcare, GE Global Research, Kitware, zSpace, AZE Technology Inc, IEEE, Medical Science & Computing Inc, Fraunhofer MEVIS, Isomics Inc, IGI Technologies, KUKA Laboratories). The agenda and projects are detailed below.
  
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A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
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==Logistics==
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*Dates: June 17-21, 2013.
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*Location: MIT, Cambridge, MA.
 
==Agenda==
 
==Agenda==
  
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|'''9:30-11pm: <font color="#4020ff">Breakout Session:'''</font><br> [[2013 Project Week Breakout Session: SimpleITK|Slicer and SimpleITK]] (Hans Johnson, Brad Lowekamp)
 
|'''9:30-11pm: <font color="#4020ff">Breakout Session:'''</font><br> [[2013 Project Week Breakout Session: SimpleITK|Slicer and SimpleITK]] (Hans Johnson, Brad Lowekamp)
 
[[MIT_Project_Week_Rooms#32-D507|32-D507]]
 
[[MIT_Project_Week_Rooms#32-D507|32-D507]]
|'''10am-12pm: <font color="#4020ff">Breakout Session:'''</font><br>[[2013 Project Week Breakout Session: IGT|Image-Guided Therapy]] (Tina Kapur)
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|
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'''9:30-10:30am''' [[2013_Tutorial_Contest|Tutorial Contest Presentations]] <br>
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[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
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<br>----------------------------------------<br>
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'''10am-12pm: <font color="#4020ff">Breakout Session:'''</font><br>[[2013 Project Week Breakout Session: IGT|Image-Guided Therapy]] (Tina Kapur)
 
[[MIT_Project_Week_Rooms#32-D407|32-D407]]
 
[[MIT_Project_Week_Rooms#32-D407|32-D407]]
|'''10am-12pm:''' [[#Projects|Project Progress Updates]]
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|'''10am-12pm:''' [[#Projects|Project Progress Updates]] <br>
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'''12pm''' [[Events:TutorialContestJune2013|Tutorial Contest Winner Announcement]]
 
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 
|-
 
|-
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|bgcolor="#ffffaa"|Lunch
 
|bgcolor="#ffffaa"|Lunch
 
|bgcolor="#ffffaa"|Lunch
 
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch
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|bgcolor="#ffffaa"|[http://www.na-mic.org/Wiki/index.php/File:NamicToAmphi.png Lunch in Outdoor Amphitheather!]
 
|bgcolor="#ffffaa"|Lunch boxes; Adjourn by 1:30pm
 
|bgcolor="#ffffaa"|Lunch boxes; Adjourn by 1:30pm
 
|-
 
|-
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[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Room (Left)]]
 
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Room (Left)]]
 
|'''1-3pm:''' [[Renewal-06-2013|NA-MIC Renewal]] <br>PIs <br>Closed Door Session with Ron
 
|'''1-3pm:''' [[Renewal-06-2013|NA-MIC Renewal]] <br>PIs <br>Closed Door Session with Ron
[[MIT_Project_Week_Rooms#32-D407|32-D407]]  
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[[MIT_Project_Week_Rooms#32-D407|32-262]]  
<br>----------------------------------------<br>
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|
'''3-4pm:''' [[2013_Tutorial_Contest|Tutorial Contest Presentations]] <br>
 
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 
|'''12:45-1pm:''' [[Events:TutorialContestJune2013|Tutorial Contest Winner Announcement]]
 
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 
 
|<br>----------------------------------------<br>'''3-5:30pm: <font color="#4020ff">Breakout Session:'''</font><br> [[2013 Summer Project Week Breakout Session:RT|Radiation Therapy]] (Greg, Csaba)
 
|<br>----------------------------------------<br>'''3-5:30pm: <font color="#4020ff">Breakout Session:'''</font><br> [[2013 Summer Project Week Breakout Session:RT|Radiation Therapy]] (Greg, Csaba)
 
[[MIT_Project_Week_Rooms#32-D407|32-D407]]
 
[[MIT_Project_Week_Rooms#32-D407|32-D407]]
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Please use [http://wiki.na-mic.org/Wiki/index.php/Project_Week/Template this template] to create wiki pages for your project. Then link the page here with a list of key personnel.  
 
Please use [http://wiki.na-mic.org/Wiki/index.php/Project_Week/Template this template] to create wiki pages for your project. Then link the page here with a list of key personnel.  
  
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==Some Stats==
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75 Projects, 104 Attendees.  First time attendees 25.
  
 
===Huntington's Disease===
 
===Huntington's Disease===
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* [[DWIConvert]] (Dave, Kent Williams)
 
* [[DWIConvert]] (Dave, Kent Williams)
 
* [[Enhance and update SPL atlas]] (Dave, Hans)
 
* [[Enhance and update SPL atlas]] (Dave, Hans)
* [[Linear Mixed-effects shape model to explore Huntington's Disease Data]] (Dave, Manasi, Hans, Ross)
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* [[Linear Mixed-effects shape model to explore Huntington's Disease Data]] (Manasi, Dave, Josh, Hans, Ross)
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<!-- If it applies, update the project count reported below and at the top of the page -->
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7 projects
  
 
===Traumatic Brain Injury===
 
===Traumatic Brain Injury===
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* [[Validation and testing of 3D Slicer modules implementing the Utah segmentation algorithm for traumatic brain injury]] (Bo Wang, Marcel Prastawa, Andrei Irimia, Micah Chambers, Guido Gerig, Jack van Horn)
 
* [[Validation and testing of 3D Slicer modules implementing the Utah segmentation algorithm for traumatic brain injury]] (Bo Wang, Marcel Prastawa, Andrei Irimia, Micah Chambers, Guido Gerig, Jack van Horn)
 
* [[Exploring multi-modal registration for improved longitudinal modeling of patient-specific 4D DTI data]] (Anuja Sharma, Bo Wang, Andrei Irimia, Micah Chambers, Guido Gerig, Jack van Horn)
 
* [[Exploring multi-modal registration for improved longitudinal modeling of patient-specific 4D DTI data]] (Anuja Sharma, Bo Wang, Andrei Irimia, Micah Chambers, Guido Gerig, Jack van Horn)
* [[2013_Summer_Project_Week: A Portable Ultrasound Device for Intracranial Hemorrhage Detection|A Portable Ultrasound Device for Intracranial Hemorrhage Detection]] (Jason White, Vicki Noble, Kirby Vosburgh)
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<!-- If it applies, update the project count reported below and at the top of the page -->
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5 projects
  
 
===Atrial Fibrillation and Cardiac Image Analysis===
 
===Atrial Fibrillation and Cardiac Image Analysis===
* [[2013_Summer_Project_Week:Fibrosis_analysis|Fibrosis distribution analysis]] (Yi Gao, LiangJia Zhu, Rob MacLeod, Josh Cates, Ron Kikinis, Allen Tannenbaum)
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* [[2013_Summer_Project_Week:Fibrosis_analysis|Fibrosis distribution analysis]] (Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)
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* [[2013_Summer_Project_Week:SegmentationAidedRegistration|Segmentation Aided Registration]] (Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)
 
* [[2013_Summer_Project_Week:CARMA_workflow_wizard|Cardiac MRI Toolkit LA segmentation and enhancement quantification workflow wizard]] (Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod)
 
* [[2013_Summer_Project_Week:CARMA_workflow_wizard|Cardiac MRI Toolkit LA segmentation and enhancement quantification workflow wizard]] (Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod)
 
* [[2013_Summer_Project_Week:CARMA_Documentataion|Cardiac MRI Toolkit Documentation Project]] (Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod)
 
* [[2013_Summer_Project_Week:CARMA_Documentataion|Cardiac MRI Toolkit Documentation Project]] (Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod)
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* [[2013_Summer_Project_Week:Sobolev_Segmenter|Medical Volume Segmentation Using Sobolev Active Contours]] (Arie Nakhmani, Yi Gao, LiangJia Zhu, Rob MacLeod, Josh Cates, Ron Kikinis, Allen Tannenbaum)
 
* [[2013_Summer_Project_Week:Sobolev_Segmenter|Medical Volume Segmentation Using Sobolev Active Contours]] (Arie Nakhmani, Yi Gao, LiangJia Zhu, Rob MacLeod, Josh Cates, Ron Kikinis, Allen Tannenbaum)
 
* [[2013_Summer_Project_Week:Left_Ventricle_Motion_Analysis_using_Tagged_MRI|Left Ventricle Motion Analysis using Tagged MRI]] (Yang Yu, Shaoting Zhang, Dimitris Metaxas)
 
* [[2013_Summer_Project_Week:Left_Ventricle_Motion_Analysis_using_Tagged_MRI|Left Ventricle Motion Analysis using Tagged MRI]] (Yang Yu, Shaoting Zhang, Dimitris Metaxas)
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<!-- If it applies, update the project count reported below and at the top of the page -->
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8 projects
  
 
===Radiation Therapy===
 
===Radiation Therapy===
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* [[2013_Summer_Project_Week:Slicer_RT:_DICOM-RT_Export | SlicerRT: Dicom-RT Export]] (Greg Sharp, Kevin Wang, Csaba Pinter)
 
* [[2013_Summer_Project_Week:Slicer_RT:_DICOM-RT_Export | SlicerRT: Dicom-RT Export]] (Greg Sharp, Kevin Wang, Csaba Pinter)
 
* [[2013_Summer_Project_Week:Proton_dose_calculation | Proton dose calculation]]  (Greg Sharp, Kevin Wang, Maxime Desplanques)
 
* [[2013_Summer_Project_Week:Proton_dose_calculation | Proton dose calculation]]  (Greg Sharp, Kevin Wang, Maxime Desplanques)
* [[2013_Summer_Project_Week:Deformable_registration_validation_toolkit | Deformable registration validation toolkit]] (Greg Sharp, Kevin Wang, Andrey Fedorov, anyone else?)
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* [[2013_Summer_Project_Week:Deformable_registration_validation_toolkit | Deformable registration validation toolkit]] (Greg Sharp, Kevin Wang, Andrey Fedorov)
* [[2013_Summer_Project_Week:Deformable_transforms | Deformable transform handling in Transforms module]] (Csaba Pinter, Alex Yarmarkovich, Andras Lasso, ?)
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* [[2013_Summer_Project_Week:Deformable_transforms | Deformable transform handling in Transforms module]] (Csaba Pinter, Alex Yarmarkovich, Andras Lasso)
* [[2013_Summer_Project_Week:Brachy_HDR_Ultrasound | Using ultrasound for prostate HDR brachytherapy]] (Adam Rankin)
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* [[2013_Summer_Project_Week:Brachy_HDR_Ultrasound | Creating DICOM series from ultrasound for prostate HDR brachytherapy]] (Adam Rankin)
* [[Analysis of different atlas-based segmentation techniques for parotid glands]] (Christian Wachinger, Karl Fritscher, Greg Sharp, Matthew Brennan)
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* [[Analysis of different atlas-based segmentation techniques for parotid glands]] (Karl Fritscher, Christian Wachinger, Greg Sharp, Matthew Brennan)
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* [[2013_Summer_Project_Week:Prostate_radiotherapy_DICOM_communication|DICOM communication between Slicer and Oncentra Prostate radiation therapy planning system]] (Andrey Fedorov, Csaba Pinter, Emily Neubauer-Sugar, Alireza Mehrtash)
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<!-- If it applies, update the project count reported below and at the top of the page -->
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10 projects
  
 
===IGT and Device Integration with Slicer===
 
===IGT and Device Integration with Slicer===
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* [[2013_Summer_Project_Week:SlicerIGT_Extension| SlicerIGT extension]] (Tamas Ungi, Junichi Tokuda, Laurent Chauvin)
 
* [[2013_Summer_Project_Week:SlicerIGT_Extension| SlicerIGT extension]] (Tamas Ungi, Junichi Tokuda, Laurent Chauvin)
 
* [[2013_Summer_Project_Week:Ultrasound_Calibration| Ultrasound Calibration]] (Matthew Toews, Daniel Kostro, William Wells, Stephen Aylward, Isaiah Norton, Tamas Ungi)
 
* [[2013_Summer_Project_Week:Ultrasound_Calibration| Ultrasound Calibration]] (Matthew Toews, Daniel Kostro, William Wells, Stephen Aylward, Isaiah Norton, Tamas Ungi)
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* [[2013_Summer_Project_Week:Ultrasound_Needle_Detection| Ultrasound Needle Detection]] (Alireza Mehrtash, Daniel Kostro, Matthew Toews, Tamas Ungi, William Wells, Tina Kapur)
 
* [[2013_Summer_Project_Week:Liver_Trajectory_Management| Liver Trajectory Management]] (Laurent Chauvin, Junichi Tokuda)
 
* [[2013_Summer_Project_Week:Liver_Trajectory_Management| Liver Trajectory Management]] (Laurent Chauvin, Junichi Tokuda)
* [[2013_Summer_Project_Week:4DUltrasound| 4D Ultrasound]] (Laurent Chauvin, Junichi Tokuda)
 
 
* [[2013_Summer_Project_Week:LabelMapStatistics| Label map statistics]] (Laurent Chauvin, Csaba Pinter)
 
* [[2013_Summer_Project_Week:LabelMapStatistics| Label map statistics]] (Laurent Chauvin, Csaba Pinter)
 
* [[2013_Summer_Project_Week:PerkTutorExtension| Perk Tutor Extension]] (Matthew Holden, Tamas Ungi)
 
* [[2013_Summer_Project_Week:PerkTutorExtension| Perk Tutor Extension]] (Matthew Holden, Tamas Ungi)
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* [[2013_Summer_Project_Week:3D_prostate_segmentation_of_Ultrasound_image| Segmentation of Prostate Gland from 3D US for Prostate Interventions]] (Xu Li, Andriy Fedorov, Tina Kapur, William Wells)
 
* [[2013_Summer_Project_Week:3D_prostate_segmentation_of_Ultrasound_image| Segmentation of Prostate Gland from 3D US for Prostate Interventions]] (Xu Li, Andriy Fedorov, Tina Kapur, William Wells)
 
* [[2013_Summer_Project_Week:3D_prostate_registration_of_Ultrasound_image_using_MRI| Registration of an MRI delineated image of the Prostate Gland ot a 3D US for Prostate Interventions]] (Demian Wassermann, Andriy Fedorov, Tina Kapur, William Wells)
 
* [[2013_Summer_Project_Week:3D_prostate_registration_of_Ultrasound_image_using_MRI| Registration of an MRI delineated image of the Prostate Gland ot a 3D US for Prostate Interventions]] (Demian Wassermann, Andriy Fedorov, Tina Kapur, William Wells)
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* [[2013_Summer_Project_Week:ProstateBRP| MRI-guided robotic prostate interventinos]] (Junichi Tokuda, Greg Fischer, Nirav Patel, Nobuhiko Hata, Clare Tempnay)
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<!-- If it applies, update the project count reported below and at the top of the page -->
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11 projects
  
 
===Chronic Obstructive Pulmonary Disease===
 
===Chronic Obstructive Pulmonary Disease===
* [[2013_Summer_Project_Week:Airway_Inspector_Porting | Porting Airway Inspector to Slicer 4]] (Raul San Jose, Demian Wassermann, Rola Harmouche)
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* [[2013_Summer_Project_Week:Airway_Inspector_Porting | Porting Airway Inspector to Slicer 4]] (Raul San Jose, Demian Wassermann, Rola Harmouche, James Ross)
* [[2013_Summer_Project_Week:MRML_Infrastructure_Airway_Inspector | Airway Inspector: Slicer Extension and MRML Infrastructure]] (Demian Wassermann, Raul San Jose, Rola Harmouche)
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* [[2013_Summer_Project_Week:MRML_Infrastructure_Airway_Inspector | Airway Inspector: Slicer Extension and MRML Infrastructure]] (Demian Wassermann,  James, Ross, Rola Harmouche, Raul San Jose)
 
* [[2013_Summer_Project_Week:Nipype_CLI_Integration | Integration of Nipype with CLI modules in the Chest Imaging Platform Library ]] (Rola Harmouche,Demian Wassermann, Raul San Jose)
 
* [[2013_Summer_Project_Week:Nipype_CLI_Integration | Integration of Nipype with CLI modules in the Chest Imaging Platform Library ]] (Rola Harmouche,Demian Wassermann, Raul San Jose)
  
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<!-- If it applies, update the project count reported below and at the top of the page -->
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3 projects
  
 
=== '''Additional Collaborations'''===
 
=== '''Additional Collaborations'''===
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* [[2013_Summer_Project_Week:VicomTech| VicomTech visit: Imaging solutions and Slicer use]] (Ivan Macia)
 
* [[2013_Summer_Project_Week:Radnostics |Spine Segmentation & Osteoporosis Detection In CT Imaging Studies]] (Anthony Blumfield, Ron Kikinis)
 
* [[2013_Summer_Project_Week:Radnostics |Spine Segmentation & Osteoporosis Detection In CT Imaging Studies]] (Anthony Blumfield, Ron Kikinis)
 
* [[2013_Summer_Project_Week: Computer Assisted Surgery| Computer Assisted Reconstruction of Complex Bone Fractures]] (Karl Fritscher, Peter Karasev, Ivan Kolesov, Allen Tannenbaum, Ron Kikinis)
 
* [[2013_Summer_Project_Week: Computer Assisted Surgery| Computer Assisted Reconstruction of Complex Bone Fractures]] (Karl Fritscher, Peter Karasev, Ivan Kolesov, Allen Tannenbaum, Ron Kikinis)
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* [[2013_Summer_Project_Week:Epilepsy_Surgery|Identification of MRI Blurring in Temporal Lobe Epilepsy Surgery]] (Luiz Murta)
 
* [[2013_Summer_Project_Week:Epilepsy_Surgery|Identification of MRI Blurring in Temporal Lobe Epilepsy Surgery]] (Luiz Murta)
 
* [[2013_Summer_Project_Week:_Is_Neurosurgical_Rigid_Registration_Really_Rigid%3F| Is Neurosurgical Rigid Registration Really Rigid?]] (Athena)
 
* [[2013_Summer_Project_Week:_Is_Neurosurgical_Rigid_Registration_Really_Rigid%3F| Is Neurosurgical Rigid Registration Really Rigid?]] (Athena)
* [[2013_Summer_Project_Week: Individualized Neuroimaging Content Analysis using 3D Slicer in Alzheimer's Disease| Individualized Neuroimaging Content Analysis using 3D Slicer]] (Sidong Liu, Weidong Cai, Sonia Pujol, Ron Kikinis)
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* [[2013_Summer_Project_Week:_Individualized_Neuroimaging_Content_Analysis_using_3D_Slicer_in_Alzheimer%27s_Disease| Individualized Neuroimaging Content Analysis using 3D Slicer in Alzheimer's Disease]] (Sidong Liu, Weidong Cai, Sonia Pujol, Ron Kikinis)
* [[2013_Summer_Project_Week:CMFReg | Cranio-Maxillofacial Registration]] (Vinicius Boen)
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* [[2013_Summer_Project_Week:CMFReg | Cranio-Maxillofacial Registration]] (Francois Budin, Vinicius Boen)
* [[2013_Summer_Project_Week:DTIPipelineExtensions | DTI Analysis Pipeline as Slicer4 Extensions]] (Vinicius Boen)
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* [[2013_Summer_Project_Week:DTIPipelineExtensions | DTI Analysis Pipeline as Slicer4 Extensions]] (Francois Budin)
*[[2013_Project_Week:WebbasedAnatomicalTeachingFrameworkSummer2013|Web-based anatomical teaching framework]] (Daniel Haehn, Steve Pieper, Rudolph Pienaar, Lilla Zollei, Nathaniel Reynolds)
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*[[2013_Project_Week:WebbasedAnatomicalTeachingFrameworkSummer2013|Web-based anatomical teaching framework]] (Nathaniel Reynolds, Lilla Zollei, Daniel Haehn, Nicolas Rannou, Steve Pieper, Rudolph Pienaar)
 
* [[2013_Summer_Project_Week:Biomedical_Image_Computing_Teaching_Modules|3D Slicer based Biomedical image computing teaching modules]]  (A. Vilchis, J-C. Avila-Vilchis, S. Pujol)
 
* [[2013_Summer_Project_Week:Biomedical_Image_Computing_Teaching_Modules|3D Slicer based Biomedical image computing teaching modules]]  (A. Vilchis, J-C. Avila-Vilchis, S. Pujol)
 
* [[2013_Summer_Project_Week:Analyzing Breast Tumor Heterogeneity Using 3D Slicer|Analyzing Breast Tumor Heterogeneity Using 3D Slicer]] (Sneha Durgapal, Jayender Jagadeesan, Tobias Penzkofer, Vivek Narayan)
 
* [[2013_Summer_Project_Week:Analyzing Breast Tumor Heterogeneity Using 3D Slicer|Analyzing Breast Tumor Heterogeneity Using 3D Slicer]] (Sneha Durgapal, Jayender Jagadeesan, Tobias Penzkofer, Vivek Narayan)
* [[2013_Summer_Project_Week:WMH Segmentation for Stroke|WMH Segmentation for Stroke]] (Adrian Dalca, Ramesh Sridharan, Polina Golland)
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* [[2013_Summer_Project_Week:WMH Segmentation for Stroke|WMH Segmentation for Stroke]] (Adrian Dalca, Ramesh Sridharan, Kayhan Batmanghelich, Polina Golland)
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* [[2013_Summer_Project_Week:WMQL Integration in Slicer|White Matter Query Language (WMQL) Integration in Slicer]] (Demian Wassermann, Carl-Fredrik Westin)
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* [[2013_Summer_Project_Week:Documentation for Slicer 4.2 Data Loading and 3D Visualization|Documentation for Slicer 4.2 Data Loading and 3D Visualization]] (Parth Amin WIT, Matt Flynn WIT, Sonia Pujol, BWH, Sylvain Jaume, WIT)
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* [http://wiki.na-mic.org/Wiki/index.php/Projects:WIT_mold_holder 3D Printing of a Prostate Slicer] (Maria Gonzalez-Puente WIT, Andriy Fedorov, BWH, Sylvain Jaume, WIT)
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* [[2013_Summer_Project_Week:WM Geometry Tools|Integration in Slicer of white matter geometry tools]] (Peter Savadjiev, Carl-Fredrik Westin)
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<!-- If it applies, update the project count reported below and at the top of the page -->
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20 projects
  
 
==='''Infrastructure'''===
 
==='''Infrastructure'''===
 
* [[2013_Summer_Project_Week:MarkupsModuleSummer2013| Markups/Annotations rewrite]] (Nicole Aucoin, Ron Kikinis)
 
* [[2013_Summer_Project_Week:MarkupsModuleSummer2013| Markups/Annotations rewrite]] (Nicole Aucoin, Ron Kikinis)
 
* [[2013_Summer_Project_Week:Patient_hierarchy | Patient hierarchy]] (Csaba Pinter, Andras Lasso, Steve Pieper)
 
* [[2013_Summer_Project_Week:Patient_hierarchy | Patient hierarchy]] (Csaba Pinter, Andras Lasso, Steve Pieper)
* [[2013_Summer_Project_Week:CLI_Improvements | CLI Improvements (hierarchy nodes, related nodes, roles)]] (Andras Lasso, Csaba Pinter, Jc, Steve, Jim, ?)
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* [[Common resampling and conversion utility functions in Slicer]] (Csaba Pinter, Steve Pieper, Hans, Kevin Wang)
* [[2013_Summer_Project_Week:CLI_Matlab | CLI module implementation in Matlab]] (Andras Lasso, Jc, Steve, Jim, ?)
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* [[2013_Summer_Project_Week:CLI_Matlab | CLI module implementation in Matlab - without building Slicer or Matlab MEX files]] (Andras Lasso, Jc)
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* [[2013_Summer_Project_Week:CLI_Improvements | CLI Improvements (hierarchy nodes, related nodes, roles)]] (Andras Lasso, Csaba Pinter, Jc, Steve, Jim)
 
* [[2013_Summer_Project_Week:Sample_Data | Sample Data]] (Steve Pieper, Jim Miller, Bill Lorensen, Jc)
 
* [[2013_Summer_Project_Week:Sample_Data | Sample Data]] (Steve Pieper, Jim Miller, Bill Lorensen, Jc)
* [[Plastimatch in NiPype]] (Paolo, Dave, Hans)
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* [[ITK -VTK wrapper]] (Paolo Zaffino, Greg Sharp, Steve Pieper)
* [[2013_Summer_Project_Week:Optimizing start time of slicer| Optimizing start time of slicer]] (Jc, Steve)
 
* [[Common resampling and conversion utility functions in Slicer]] (Csaba Pinter, Steve Pieper, Hans, Kevin Wang)
 
 
* [[2013_Summer_Project_Week:CLI_modules_in_MeVisLab| Integrating CTK CLI modules into MeVisLab]] (Hans Meine, Steve, Jc)
 
* [[2013_Summer_Project_Week:CLI_modules_in_MeVisLab| Integrating CTK CLI modules into MeVisLab]] (Hans Meine, Steve, Jc)
* [[2013_Summer_Project_Week:SimpleITK_GUI| Common Usage GUI for SimpleITK]] (Hans Johnson, Dave Welch, Brad Lowekamp)
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* [[2013_Summer_Project_Week:SimpleITK_GUI| Common Usage GUI for SimpleITK]] (Dave Welch, Brad Lowekamp, Hans Johnson, Steve)
 
* [[2013_Summer_Project_Week:Extension_dependencies| Extension dependencies]] (Jc, Adam Rankin)
 
* [[2013_Summer_Project_Week:Extension_dependencies| Extension dependencies]] (Jc, Adam Rankin)
* [[2013_Summer_Project_Week:Parameter_heirarchy| Parameter Hierarchy]] (Adam Rankin, ??)
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* [[2013_Summer_Project_Week:Parameter_heirarchy| Parameter (time) Hierarchy]] (Adam Rankin, Andras Lasso, Steve Pieper)
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* [[2013_Summer_Project_Week:ITK_Shared_IO_Libraries| ITK Shared I/O Libraries]] (Jim,Brad Lowekamp, Jc)
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* [[2013_Summer_Project_Week:Python_Embedding| Python Embedding Library]] (Rui, Jim, Jc, Steve)
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* [[2013_Summer_Project_Week:MaskedFFTNormalizedCorrelationOverlay | Masked FFT Normalized Correlation Overlay]] (Dirk, Hans, Brad)
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<!-- If it applies, update the project count reported below and at the top of the page -->
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12 projects
  
 
== '''Background''' ==
 
== '''Background''' ==
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The event itself will start off with a short presentation by each project team, driven using their previously created description, and will help all participants get acquainted with others who are doing similar work. In the rest of the week, about half the time will be spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half will be spent in project teams, doing hands-on project work.  The hands-on activities will be done in 40-50 small teams of size 2-4, each with a mix of multi-disciplinary expertise.  To facilitate this work, a large room at MIT will be setup with several tables, with internet and power access, and each computer software development based team will gather on a table with their individual laptops, connect to the internet to download their software and data, and be able to work on their projects.  Teams working on projects that require the use of medical devices will proceed to Brigham and Women's Hospital and carry out their experiments there. On the last day of the event, a closing presentation session will be held in which each project team will present a summary of what they accomplished during the week.
 
The event itself will start off with a short presentation by each project team, driven using their previously created description, and will help all participants get acquainted with others who are doing similar work. In the rest of the week, about half the time will be spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half will be spent in project teams, doing hands-on project work.  The hands-on activities will be done in 40-50 small teams of size 2-4, each with a mix of multi-disciplinary expertise.  To facilitate this work, a large room at MIT will be setup with several tables, with internet and power access, and each computer software development based team will gather on a table with their individual laptops, connect to the internet to download their software and data, and be able to work on their projects.  Teams working on projects that require the use of medical devices will proceed to Brigham and Women's Hospital and carry out their experiments there. On the last day of the event, a closing presentation session will be held in which each project team will present a summary of what they accomplished during the week.
  
This event is part of the translational research efforts of [http://www.na-mic.org NA-MIC], [http://www.ncigt.org NCIGT], [http://nac.spl.harvard.edu/ NAC], [http://catalyst.harvard.edu/home.html Harvard Catalyst],  [http://www.cimit.org CIMIT], and OCAIRO.  It is an expansion of the NA-MIC Summer Project Week that has been held annually since 2005. It will be held every summer at MIT and Brigham and Womens Hospital in Boston, typically during the last full week of June, and in Salt Lake City in the winter, typically during the second week of January.   
+
This event is part of the translational research efforts of [http://www.na-mic.org NA-MIC], [http://www.ncigt.org NCIGT], [http://nac.spl.harvard.edu/ NAC], [http://catalyst.harvard.edu/home.html Harvard Catalyst],  [http://www.cimit.org CIMIT], and OCAIRO.  It is an expansion of the NA-MIC Summer Project Week that has been held annually since 2005. It will be held every summer at MIT and Brigham and Women's Hospital in Boston, typically during the last full week of June, and in Salt Lake City in the winter, typically during the second week of January.   
  
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
+
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week NA-MIC Project Week mailing list].
  
  
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# Please note that by the time we get to the project event, we should be trying to close off a project milestone rather than starting to work on one...
 
# Please note that by the time we get to the project event, we should be trying to close off a project milestone rather than starting to work on one...
 
# People doing Slicer related projects should come to project week with slicer built on your laptop.
 
# People doing Slicer related projects should come to project week with slicer built on your laptop.
## See the [http://www.slicer.org/slicerWiki/index.php/Documentation/4.0/Developers Developer Section of slicer.org] for information.
+
## See the [https://www.slicer.org/wiki/Documentation/4.0/Developers Developer Section of slicer.org] for information.
 
## Projects to develop extension modules should be built against the latest Slicer4 trunk.
 
## Projects to develop extension modules should be built against the latest Slicer4 trunk.
  
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Do not add your name to this list - it is maintained by the organizers based on your paid registration.  ([http://www.regonline.com/Register/Checkin.aspx?EventID=1233699  Please click here to register.])
 
Do not add your name to this list - it is maintained by the organizers based on your paid registration.  ([http://www.regonline.com/Register/Checkin.aspx?EventID=1233699  Please click here to register.])
  
#Parth Amin, WIT, aminp@wit.edu
+
# Parth Amin :: Wentworth Institute of Technology :: aminp at wit.edu
#Charles Anderson, BWH, canderson26@partners.org
+
# Charles Anderson :: Brigham and Women's Hospital :: canderson26 at partners.org
#Peter Anderson, retired, traneus@verizon.net
+
# Peter Anderson :: Retired :: traneus at verizon.net
#Nicole Aucoin, BWH, nicole@bwh.harvard.edu
+
# Nicole Aucoin :: Brigham and Women's Hospital :: nicole at bwh.harvard.edu
#Juan Carlos Avila Vilchis, Univ del Estado de Mexico, jc.avila.vilchis@hotmail.com
+
# Kayhan Batmanghelich :: Massachusetts Institute of Technology :: kayhan at csail.mit.edu
#Salma Bengali, Univ UT, salma.bengali@carma.utah.edu
+
# Salma Bengali :: University of Utah :: salma.bengali at carma.utah.edu
#Anthony Blumfield, Radnostics, Anthony.Blumfield@Radnostics.com
+
# Anthony Blumfield :: Radnostics :: Anthony.Blumfield at Radnostics.com
#Vinicius Boen, Univ Michigan, vboen@umich.edu
+
# Vinicius Boen :: University of Michigan :: vboen at umich.edu
#Matthew Brennan, MIT, brennanm@mit.edu
+
# Taylor Braun-Jones :: General Electric :: taylor.braun-jones at ge.com
#Francois Budin, NIRAL-UNC, fbudin@unc.edu
+
# Matthew Brennan :: Massachusetts Institute of Technology :: brennanm at mit.edu
#Ivan Buzurovic, BWH/HMS, ibuzurovic@lroc.harvard.edu
+
# Francois Budin :: University of North Carolina :: fbudin at unc.edu
#Josh Cates, Univ UT, cates@sci.utah.edu
+
# Ivan Buzurovic :: Brigham and Women's Hospital :: ibuzurovic at lroc.harvard.edu
#Micah Chambers, UCLA, micahcc@ucla.edu
+
# Juan Carlos Avila-Vilchis :: jc.avila.vilchis at hotmail.com
#Laurent Chauvin, BWH - SPL, lchauvin@bwh.harvard.edu
+
# Joshua Cates :: University of Utah :: cates at sci.utah.edu
#Marine Clogenson, Ecole Polytechnique Federale de Lausanne (Switzerland), marine.clogenson@epfl.ch
+
# Micah Chambers :: UCLA :: micahcc at ucla.edu
#Adrian Dalca, MIT, adalca@MIT.EDU
+
# Laurent Chauvin :: Brigham and Women's Hospital :: lchauvin at bwh.harvard.edu
#Matthew D'Artista, BWH - SPL, mdartista7@gmail.com
+
# Marine Clogenson :: Ecole Polytechnique Federale de Lausanne :: marine.clogenson at epfl.ch
#Manasi Datar, Univ UT-SCI Institute, datar@sci.utah.edu
+
# Matthew D'Artista :: Brigham and Women's Hospital :: mdartista7 at gmail.com  
#Sneha Durgapal, BWH, durgapalsneha@gmail.com
+
# Adrian Dalca :: Massachusetts Institute of Technology :: adalca at MIT.EDU
#Luping Fang, Zhejiang Univ of Technology (China), flp@zjut.edu.cn
+
# Manasi Datar :: University of Utah :: datar at sci.utah.edu
#Andriy Fedorov, BWH, fedorov@bwh.harvard.edu
+
# Sneha Durgapal :: Brigham and Women's Hospital :: durgapalsneha at gmail.com
#Jean-Christophe Fillion-Robin, Kitware, jchris.fillionr@kitware.com
+
# Andriy Fedorov :: Brigham and Women's Hospital :: fedorov at bwh.harvard.edu
#Gregory Fischer, WPI, gfischer@wpi.edu
+
# Jean-Christophe Fillion-Robin :: Kitware, Inc. :: jchris.fillionr at kitware.com
#Barton Fiske, zSpace Inc, bfiske@zspace.com
+
# Gregory Fischer :: Worcester Polytechnic Institute :: gfischer at wpi.edu
#Matthew Flynn, WIT, flynnm3@wit.edu
+
# Barton Fiske :: zSpace :: bfiske at zspace.com
#Karl Fritscher, MGH, kfritscher@gmail.com
+
# Matthew Flynn :: Wentworth Institute of Technology :: flynnm3 at wit.edu
#Yi Gao, Univ AL Birmingham, gaoyi.cn@gmail.com
+
# Karl Fritscher :: Massachusetts General Hospital :: kfritscher at gmail.com
#Maria Gonzalez-Puente, WIT, gonzalezpuentem@wit.edu
+
# Yi Gao :: University of Alabama at Birmingham :: gaoyi.cn at gmail.com
#Daniel Haehn, Boston Childrens Hospital, daniel.haehn@childrens.harvard.edu
+
# Alexandra Golby :: Brigham and Women's Hospital :: agolby at partners.org
#Michael Halle, BWH-SPL, mhalle@bwh.harvard.edu
+
# Maria Gonzalez-Puente :: Wentworth Institute of Technology :: gonzalezpuentem at wit.edu
#Rola Harmouche, BWH, rharmo@bwh.harvard.edu
+
# Dan Groszmann :: General Electric :: daniel.groszmann at ge.com
#Amanda Hartung, Rochester Inst of Tech, amh1646@rit.edu
+
# Daniel Haehn :: Boston Children's Hospital :: daniel.haehn at childrens.harvard.edu
#Nobuhiko Hata, BWH, hata@bwh.harvard.edu
+
# Michael Halle :: Brigham and Women's Hospital :: mhalle at bwh.harvard.edu
#Nicholas Herlambang, AZE Technology Inc, nicholas.herlambang@azetech.com
+
# Rola Harmouche :: Brigham and Women's Hospital :: rharmo at bwh.harvard.edu
#Matthew Holden, Queen's Univ (Canada), mholden8@cs.queensu.ca
+
# Amanda Hartung :: Rochester Institute of Technology :: amh1646 at rit.edu
#Andrei Irimia, UCLA, andrei.irimia@loni.ucla.edu
+
# Nobuhiko Hata :: Brigham and Women's Hospital :: hata at bwh.harvard.edu
#Jayender Jagadeesan, BWH-SPL, jayender@bwh.harvard.edu
+
# Nicholas Herlambang :: AZE Technology, Inc. :: nicholas.herlambang at azetech.com
#Hans Johnson, Univ Iowa, hans-johnson@uiowa.edu
+
# Matthew Holden :: Queen's University :: mholden8 at cs.queensu.ca
#Tina Kapur, BWH/HMS, tkapur@bwh.harvard.edu
+
# Andrei Irimia :: UCLA :: andrei.irimia at loni.ucla.edu
#Alex Kikinis, BWH, alexkikinis@gmail.com
+
# Jayender Jagadeesan :: Brigham and Women's Hospital :: jayender at bwh.harvard.edu
#Ron Kikinis, HMS, kikinis@bwh.harvard.edu
+
# Sylvain Jaume :: Wentworth Institute of Technology :: jaumes at wit.edu
#Nils Klarlund, IEEE, klarlund@ieee.org
+
# Daniel Jimenez :: Texas A&M University :: daniel.jimenez at gmail.com
#Daniel Kostro, BWH, dkostro@bwh.harvard.edu
+
# Hans Johnson :: University of Iowa :: hans-johnson at uiowa.edu
#Andras Lasso, Queen's Univ (Canada), lasso@cs.queensu.ca
+
# Tina Kapur :: Brigham and Women's Hospital :: tkapur at bwh.harvard.edu
#Rui Li, GE Global Research, li.rui@ge.com
+
# Alex Kikinis :: Brigham and Women's Hospital :: alexkikinis at gmail.com
#Xu Li, BWH, lixu0103@gmail.com
+
# Ron Kikinis :: Brigham and Women's Hospital :: kikinis at bwh.harvard.edu
#Lichen Liang, MGH, lichenl@nmr.mgh.harvard.edu
+
# Nils Klarlund :: IEEE :: klarlund at ieee.org
#Sidong Liu, Univ Sydney (Australia), sliu7418@uni.sydney.edu.au
+
# Daniel Kostro :: Brigham and Women's Hospital :: dkostro at bwh.harvard.edu
#William Lorensen, Bill's Basement, bill.lorensen@gmail.com  
+
# Andras Lasso :: Queen's University :: lasso at cs.queensu.ca
#Bradley Lowekamp, Medical Science & Computing Inc, bradley.lowekamp@nih.gov
+
# Rui Li :: General Electric :: li.rui at ge.com
#Athena Lyons, Univ Western Australia, 20359511@student.uwa.edu.au
+
# Xu Li :: Brigham and Women's Hospital :: lixu0103 at gmail.com
#Nikos Makris, MGH, nikos@nmr.mgh.harvard.edu
+
# Lichen Liang :: Massachusetts General Hospital :: lichenl at nmr.mgh.harvard.edu
#Katie Mastrogiacomo, BWH - SPL, kmast@bwh.harvard.edu
+
# Sidong Liu :: University of Sydney :: sliu7418 at uni.sydney.edu.au
#Alireza Mehrtash, BWH - SPL, mehrtash@bwh.harvard.edu
+
# Bill Lorensen :: Bill's Basement :: bill.lorensen at gmail.com
#Hans Meine, Fraunhofer MEVIS (Germany), hans.meine@mevis.fraunhofer.de
+
# Bradley Lowekamp :: Medical Science & Computing Inc. :: bradley.lowekamp at nih.gov
#Jim Miller, GE Global Research, millerjv@ge.com
+
# Athena Lyons :: University of Western Australia :: 20359511 at student.uwa.edu.au
#Luis Murta, Univ Sao Paulo (Brazil), lomurta@gmail.com
+
# Nikos Makris :: Massachusetts General Hospital :: nikos at nmr.mgh.harvard.edu
#Arie Nakhmani, Univ AL Birmingham, anry@uab.edu
+
# Katie Mastrogiacomo :: Brigham and Women's Hospital :: kmast at bwh.harvard.edu
#Isaiah Norton, BWH, inorton@bwh.harvard.edu
+
# Alireza Mehrtash :: Brigham and Women's Hospital :: mehrtash at bwh.harvard.edu
#Lauren O'Donnell, BWH, odonnell@bwh.harvard.edu
+
# Hans Meine :: Fraunhofer MEVIS, Bremen :: hans.meine at mevis.fraunhofer.de
#Dirk Padfield, GE Global Research, padfield@research.ge.com
+
# James Miller :: General Electric :: millerjv at ge.com
#Jian Pan, Zhejiang Univ of Technology (China), pj@zjut.edu.cn
+
# Luiz Otavio Murta :: University of Sao Paulo :: lomurta at gmail.com
#George Papadimitriou, MGH, georgep@nmr.mgh.harvard.edu
+
# Arie Nakhmani :: University of Alabama at Birmingham :: anry at uab.edu
#Tobias Penzkofer, BWH - SPL, pt@bwh.harvard.edu
+
# Isaiah Norton :: Brigham and Women's Hospital :: inorton at bwh.harvard.edu
#Rudolph Pienaar, Boston Childrens Hospital, Rudolph.Pienaar@childrens.harvard.edu
+
# Lauren O'Donnell :: Brigham and Women's Hospital :: odonnell at bwh.harvard.edu
#Steve Pieper, Isomics Inc, pieper@isomics.com
+
# Dirk Padfield :: General Electric :: padfield at research.ge.com
#Csaba Pinter, Queen's Univ (Canada), pinter@cs.queensu.ca
+
# Jian Pan :: University of Technology, China :: pj at zjut.edu.cn
#Sonia Pujol, HMS, spujol@bwh.harvard.edu
+
# George Papadimitriou :: Massachusetts General Hospital :: georgep at nmr.mgh.harvard.edu
#Adam Rankin, Queen's Univ (Canada), rankin@cs.queensu.ca
+
# Nirav Patel :: Worcester Polytechnic Institute :: napatel at wpi.edu
#Nathaniel Reynolds, MGH, reynolds@nmr.mgh.harvard.edu
+
# Tobias Penzkofer :: Brigham and Women's Hospital :: pt at bwh.harvard.edu
#Raul San Jose, BWH, rjosest@bwh.harvard.edu
+
# Rudolph Pienaar :: Boston Children's Hospital :: Rudolph.Pienaar at childrens.harvard.edu
#Peter Savadjiev, BWH, petersv@bwh.harvard.edu
+
# Steve Pieper :: Isomics, Inc. :: pieper at isomics.com
#Anuja Sharma, Univ UT-SCI Institute, anuja@cs.utah.edu
+
# Csaba Pinter :: Queen's University :: pinter at cs.queensu.ca
#Greg Sharp, MGH, gcsharp@partners.org
+
# William Plishker :: IGI Technologies :: will at igitechnologies.com
#Nadya Shusharina, MGH, nshusharina@partners.org
+
# Sonia Pujol :: Brigham and Women's Hospital :: spujol at bwh.harvard.edu
#Sebastian Tauscher, Leibniz Univ Hannover (Germany), sebastian.tauscher@imes.uni-hannover.de
+
# Adam Rankin :: Queen's University :: rankin at cs.queensu.ca
#Clare Tempany, BWH, ctempanyafdhal@partners.org
+
# Nathaniel Reynolds :: Massachusetts General Hospital :: reynolds at nmr.mgh.harvard.edu
#Cyrill von Tiesenhausen, KUKA Laboratories (Germany), cyrill.tiesenhausen@kuka.com
+
# Raul San Jose Estepar :: Brigham and Women's Hospital :: rjosest at bwh.harvard.edu
#Gaurie Tilak, BWH, gaurie_tilak@hms.harvard.edu
+
# Peter Savadjiev :: Brigham and Women's Hospital :: petersv at bwh.harvard.edu
#Matthew Toews, BWH/HMS, mt@bwh.harvard.edu
+
# Tobias Schroeder :: General Electric :: tobias.schroeder at ge.com
#Junichi Tokuda, BWH, tokuda@bwh.harvard.edu
+
# Anuja Sharma :: University of Utah :: anuja at cs.utah.edu
#Tamas Ungi, Queen's Univ (Canada), ungi@cs.queensu.ca
+
# Gregory Sharp :: Massachusetts General Hospital :: gcsharp at partners.org
#Adriana Vilchis González, Univ del Estado de Mexico, hvigady@hotmail.com
+
# Nadya Shusharina :: Massachusetts General Hospital :: nshusharina at partners.org
#Kirby Vosburgh, BWH, kirby@bwh.harvard.edu
+
# Sebastian Tauscher :: Leibniz Universität Hannover :: sebastian.tauscher at imes.uni-hannover.de
#Christian Wachinger, MIT, wachinge@mit.edu
+
# Clare Tempany :: Brigham and Women's Hospital :: ctempanyafdhal at partners.org
#Bo Wang, Univ UT-SCI Institute, bowang@sci.utah.edu
+
# Gaurie Tilak :: Brigham and Women's Hospital :: gaurie_tilak at hms.harvard.edu
#Demian Wassermann, BWH, demian@bwh.harvard.edu
+
# Matthew Toews :: Brigham and Women's Hospital :: mt at bwh.harvard.edu
#David Welch, Univ Iowa, david-welch@uiowa.edu
+
# Junichi Tokuda :: Brigham and Women's Hospital :: tokuda at bwh.harvard.edu
#William Wells, BWH/HMS, sw@bwh.harvard.edu
+
# Tamas Ungi :: Queen's University :: ungi at cs.queensu.ca
#Phillip White, BWH/HMS, white@bwh.harvard.edu
+
# Adriana Vilchis González :: Universidad Autonoma del Estado de Mexico :: hvigady at hotmail.com
#Alex Yarmarkovich, Isomics Inc, alexy@bwh.harvard.edu
+
# Cyrill von Tiesenhausen :: KUKA Laboratories :: cyrill.tiesenhausen at kuka.com
#Kitaro Yoshimitsu, BWH, kitarof1@bwh.harvard.edu
+
# Kirby Vosburgh :: Brigham and Women's Hospital :: kirby at bwh.harvard.edu
#Yang Yu, Rutgers Univ, yyu@cs.rutgers.edu
+
# Christian Wachinger :: Massachusetts Institute of Technology :: wachinge at mit.edu
#Paolo Zaffino, Univ Magna Graecia of Catanzaro (Italy), p.zaffino@unicz.it
+
# Bo Wang :: University of Utah :: bowang at sci.utah.edu
#Lilla Zollei, MGH, lzollei@nmr.mgh.harvard.edu
+
# Demian Wassermann :: Brigham and Women's Hospital :: demian at bwh.harvard.edu
 +
# David Welch :: University of Iowa :: david-welch at uiowa.edu
 +
# Sandy Wells :: Brigham and Women's Hospital :: sw at bwh.harvard.edu
 +
# Jason White :: Brigham and Women's Hospital :: white at bwh.harvard.edu
 +
# Alexander Yarmarkovich :: Isomics, Inc. :: alexy at bwh.harvard.edu
 +
# Kitaro Yoshimitsu :: Brigham and Women's Hospital :: kitarof1 at bwh.harvard.edu
 +
# Yang Yu :: Rutgers University :: yyu at cs.rutgers.edu
 +
# Paolo Zaffino :: Magna Græcia University of Catanzaro :: p.zaffino at unicz.it
 +
# Luping Fang Zhejiang :: University of Technology, China :: flp at zjut.edu.cn
 +
# Lilla Zollei :: Massachusetts General Hospital :: lzollei at nmr.mgh.harvard.edu

Latest revision as of 17:37, 10 July 2017

Home < 2013 Summer Project Week

Back to Events

PW-MIT2013.png

Welcome to the web page for the 17th Project Week!

Summary

The 17th PROJECT EVENT was held on June 17-21, 2013 at MIT. It recorded 104 registered attendees, who worked on 75 projects. These attendees represented 22 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, Boston Children’s Hospital, MIT, WPI, WIT, University of Alabama, Rochester Institute of Technology, University of Utah, University of Iowa, University of Michigan, UCLA, Rutgers University, University del Estado de Mexico, Ecole Polytechnique Federale de Lausanne, Zhejiang University of Technology, Queen’s University, University of Sydney, University of Western Australia, University Sao Paulo, Leibniz University, Hannover, University Magna Graecia of Catanzaro) and 13 companies (NIRAL-UNC, Radnostics, GE Healthcare, GE Global Research, Kitware, zSpace, AZE Technology Inc, IEEE, Medical Science & Computing Inc, Fraunhofer MEVIS, Isomics Inc, IGI Technologies, KUKA Laboratories). The agenda and projects are detailed below.

A summary of all past Project Events.

Logistics

  • Dates: June 17-21, 2013.
  • Location: MIT, Cambridge, MA.

Agenda

Time Monday, June 17 Tuesday, June 18 Wednesday, June 19 Thursday, June 20 Friday, June 21
Project Presentations NA-MIC Update Day IGT and RT Day Reporting Day
8:30am Breakfast Breakfast Breakfast Breakfast
9am-12pm 10-11am Slicer4 Python Modules, Testing, Q&A (Steve Pieper)

Grier Room (Left)

9:30-11pm: Breakout Session:
Slicer and SimpleITK (Hans Johnson, Brad Lowekamp)

32-D507

9:30-10:30am Tutorial Contest Presentations
Grier Rooms
----------------------------------------
10am-12pm: Breakout Session:
Image-Guided Therapy (Tina Kapur) 32-D407

10am-12pm: Project Progress Updates

12pm Tutorial Contest Winner Announcement Grier Rooms

12pm-1pm Lunch Lunch Lunch Lunch in Outdoor Amphitheather! Lunch boxes; Adjourn by 1:30pm
1pm-5:30pm 1-1:05pm: Ron Kikinis: Welcome

Grier Rooms
----------------------------------------
1:05-3:30pm: Project Introductions (all Project Leads) Grier Rooms
----------------------------------------
3:30-4:30pm Slicer4 Extensions (Jean-Christophe Fillion-Robin)
Grier Room (Left)

1-3pm: NA-MIC Renewal
PIs
Closed Door Session with Ron

32-262


----------------------------------------
3-5:30pm: Breakout Session:
Radiation Therapy (Greg, Csaba)

32-D407

5:30pm Adjourn for the day Adjourn for the day Adjourn for the day Adjourn for the day

Projects

Please use this template to create wiki pages for your project. Then link the page here with a list of key personnel.


Some Stats

75 Projects, 104 Attendees. First time attendees 25.

Huntington's Disease

7 projects

Traumatic Brain Injury

5 projects

Atrial Fibrillation and Cardiac Image Analysis

8 projects

Radiation Therapy

10 projects

IGT and Device Integration with Slicer

11 projects

Chronic Obstructive Pulmonary Disease

3 projects

Additional Collaborations

20 projects

Infrastructure

12 projects

Background

We are pleased to announce the 17th PROJECT WEEK of hands-on research and development activity for applications in Neuroscience, Image-Guided Therapy and several additional areas of biomedical research that enable personalized medicine. Participants will engage in open source programming using the NA-MIC Kit, algorithm design, medical imaging sequence development, tracking experiments, and clinical application. The main goal of this event is to move forward the translational research deliverables of the sponsoring centers and their collaborators. Active and potential collaborators are encouraged and welcome to attend this event. This event will be set up to maximize informal interaction between participants. If you would like to learn more about this event, please click here to join our mailing list.


Active preparation begins on Thursday, April 25th at 3pm ET, with a kick-off teleconference. Invitations to this call will be sent to members of the sponsoring communities, their collaborators, past attendees of the event, as well as any parties who have expressed an interest in working with these centers. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient coverage for all. Subsequent teleconferences will allow for more focused discussions on individual projects and allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams will be asked to fill in a template page on this wiki that describes the objectives and plan of their projects.

The event itself will start off with a short presentation by each project team, driven using their previously created description, and will help all participants get acquainted with others who are doing similar work. In the rest of the week, about half the time will be spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half will be spent in project teams, doing hands-on project work. The hands-on activities will be done in 40-50 small teams of size 2-4, each with a mix of multi-disciplinary expertise. To facilitate this work, a large room at MIT will be setup with several tables, with internet and power access, and each computer software development based team will gather on a table with their individual laptops, connect to the internet to download their software and data, and be able to work on their projects. Teams working on projects that require the use of medical devices will proceed to Brigham and Women's Hospital and carry out their experiments there. On the last day of the event, a closing presentation session will be held in which each project team will present a summary of what they accomplished during the week.

This event is part of the translational research efforts of NA-MIC, NCIGT, NAC, Harvard Catalyst, CIMIT, and OCAIRO. It is an expansion of the NA-MIC Summer Project Week that has been held annually since 2005. It will be held every summer at MIT and Brigham and Women's Hospital in Boston, typically during the last full week of June, and in Salt Lake City in the winter, typically during the second week of January.

Please make sure that you are on the NA-MIC Project Week mailing list.


Logistics

  • Dates: June 17-21, 2013.
  • Location: Stata Center / RLE MIT.
  • REGISTRATION: http://www.regonline.com/namic2013summerprojweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.
  • Registration Fee: $300.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Room sharing: If interested, add your name to the list before May 27th. See here

Preparation

  1. Please make sure that you are on the http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week mailing list
  2. The NA-MIC engineering team will be discussing projects in a their weekly teleconferences. Participants from the above mailing list will be invited to join to discuss their projects, so please make sure you are on it!
  3. By 3pm ET on Thursday May 8, all participants to add a one line title of their project to #Projects
  4. By 3pm ET on Thursday June 6, all project leads to complete Complete a templated wiki page for your project. Please do not edit the template page itself, but create a new page for your project and cut-and-paste the text from this template page. If you have questions, please send an email to tkapur at bwh.harvard.edu.
  5. By 3pm on June 13: Create a directory for each project on the NAMIC Sandbox (Matt)
    1. Commit on each sandbox directory the code examples/snippets that represent our first guesses of appropriate methods. (Luis and Steve will help with this, as needed)
    2. Gather test images in any of the Data sharing resources we have (e.g. XNAT/MIDAS). These ones don't have to be many. At least three different cases, so we can get an idea of the modality-specific characteristics of these images. Put the IDs of these data sets on the wiki page. (the participants must do this.)
    3. Where possible, setup nightly tests on a separate Dashboard, where we will run the methods that we are experimenting with. The test should post result images and computation time. (Matt)
  6. Please note that by the time we get to the project event, we should be trying to close off a project milestone rather than starting to work on one...
  7. People doing Slicer related projects should come to project week with slicer built on your laptop.
    1. See the Developer Section of slicer.org for information.
    2. Projects to develop extension modules should be built against the latest Slicer4 trunk.

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration. (Please click here to register.)

  1. Parth Amin :: Wentworth Institute of Technology :: aminp at wit.edu
  2. Charles Anderson :: Brigham and Women's Hospital :: canderson26 at partners.org
  3. Peter Anderson :: Retired :: traneus at verizon.net
  4. Nicole Aucoin :: Brigham and Women's Hospital :: nicole at bwh.harvard.edu
  5. Kayhan Batmanghelich :: Massachusetts Institute of Technology :: kayhan at csail.mit.edu
  6. Salma Bengali :: University of Utah :: salma.bengali at carma.utah.edu
  7. Anthony Blumfield :: Radnostics :: Anthony.Blumfield at Radnostics.com
  8. Vinicius Boen :: University of Michigan :: vboen at umich.edu
  9. Taylor Braun-Jones :: General Electric :: taylor.braun-jones at ge.com
  10. Matthew Brennan :: Massachusetts Institute of Technology :: brennanm at mit.edu
  11. Francois Budin :: University of North Carolina :: fbudin at unc.edu
  12. Ivan Buzurovic :: Brigham and Women's Hospital :: ibuzurovic at lroc.harvard.edu
  13. Juan Carlos Avila-Vilchis :: jc.avila.vilchis at hotmail.com
  14. Joshua Cates :: University of Utah :: cates at sci.utah.edu
  15. Micah Chambers :: UCLA :: micahcc at ucla.edu
  16. Laurent Chauvin :: Brigham and Women's Hospital :: lchauvin at bwh.harvard.edu
  17. Marine Clogenson :: Ecole Polytechnique Federale de Lausanne :: marine.clogenson at epfl.ch
  18. Matthew D'Artista :: Brigham and Women's Hospital :: mdartista7 at gmail.com
  19. Adrian Dalca :: Massachusetts Institute of Technology :: adalca at MIT.EDU
  20. Manasi Datar :: University of Utah :: datar at sci.utah.edu
  21. Sneha Durgapal :: Brigham and Women's Hospital :: durgapalsneha at gmail.com
  22. Andriy Fedorov :: Brigham and Women's Hospital :: fedorov at bwh.harvard.edu
  23. Jean-Christophe Fillion-Robin :: Kitware, Inc. :: jchris.fillionr at kitware.com
  24. Gregory Fischer :: Worcester Polytechnic Institute :: gfischer at wpi.edu
  25. Barton Fiske :: zSpace :: bfiske at zspace.com
  26. Matthew Flynn :: Wentworth Institute of Technology :: flynnm3 at wit.edu
  27. Karl Fritscher :: Massachusetts General Hospital :: kfritscher at gmail.com
  28. Yi Gao :: University of Alabama at Birmingham :: gaoyi.cn at gmail.com
  29. Alexandra Golby :: Brigham and Women's Hospital :: agolby at partners.org
  30. Maria Gonzalez-Puente :: Wentworth Institute of Technology :: gonzalezpuentem at wit.edu
  31. Dan Groszmann :: General Electric :: daniel.groszmann at ge.com
  32. Daniel Haehn :: Boston Children's Hospital :: daniel.haehn at childrens.harvard.edu
  33. Michael Halle :: Brigham and Women's Hospital :: mhalle at bwh.harvard.edu
  34. Rola Harmouche :: Brigham and Women's Hospital :: rharmo at bwh.harvard.edu
  35. Amanda Hartung :: Rochester Institute of Technology :: amh1646 at rit.edu
  36. Nobuhiko Hata :: Brigham and Women's Hospital :: hata at bwh.harvard.edu
  37. Nicholas Herlambang :: AZE Technology, Inc. :: nicholas.herlambang at azetech.com
  38. Matthew Holden :: Queen's University :: mholden8 at cs.queensu.ca
  39. Andrei Irimia :: UCLA :: andrei.irimia at loni.ucla.edu
  40. Jayender Jagadeesan :: Brigham and Women's Hospital :: jayender at bwh.harvard.edu
  41. Sylvain Jaume :: Wentworth Institute of Technology :: jaumes at wit.edu
  42. Daniel Jimenez :: Texas A&M University :: daniel.jimenez at gmail.com
  43. Hans Johnson :: University of Iowa :: hans-johnson at uiowa.edu
  44. Tina Kapur :: Brigham and Women's Hospital :: tkapur at bwh.harvard.edu
  45. Alex Kikinis :: Brigham and Women's Hospital :: alexkikinis at gmail.com
  46. Ron Kikinis :: Brigham and Women's Hospital :: kikinis at bwh.harvard.edu
  47. Nils Klarlund :: IEEE :: klarlund at ieee.org
  48. Daniel Kostro :: Brigham and Women's Hospital :: dkostro at bwh.harvard.edu
  49. Andras Lasso :: Queen's University :: lasso at cs.queensu.ca
  50. Rui Li :: General Electric :: li.rui at ge.com
  51. Xu Li :: Brigham and Women's Hospital :: lixu0103 at gmail.com
  52. Lichen Liang :: Massachusetts General Hospital :: lichenl at nmr.mgh.harvard.edu
  53. Sidong Liu :: University of Sydney :: sliu7418 at uni.sydney.edu.au
  54. Bill Lorensen :: Bill's Basement :: bill.lorensen at gmail.com
  55. Bradley Lowekamp :: Medical Science & Computing Inc. :: bradley.lowekamp at nih.gov
  56. Athena Lyons :: University of Western Australia :: 20359511 at student.uwa.edu.au
  57. Nikos Makris :: Massachusetts General Hospital :: nikos at nmr.mgh.harvard.edu
  58. Katie Mastrogiacomo :: Brigham and Women's Hospital :: kmast at bwh.harvard.edu
  59. Alireza Mehrtash :: Brigham and Women's Hospital :: mehrtash at bwh.harvard.edu
  60. Hans Meine :: Fraunhofer MEVIS, Bremen :: hans.meine at mevis.fraunhofer.de
  61. James Miller :: General Electric :: millerjv at ge.com
  62. Luiz Otavio Murta :: University of Sao Paulo :: lomurta at gmail.com
  63. Arie Nakhmani :: University of Alabama at Birmingham :: anry at uab.edu
  64. Isaiah Norton :: Brigham and Women's Hospital :: inorton at bwh.harvard.edu
  65. Lauren O'Donnell :: Brigham and Women's Hospital :: odonnell at bwh.harvard.edu
  66. Dirk Padfield :: General Electric :: padfield at research.ge.com
  67. Jian Pan :: University of Technology, China :: pj at zjut.edu.cn
  68. George Papadimitriou :: Massachusetts General Hospital :: georgep at nmr.mgh.harvard.edu
  69. Nirav Patel :: Worcester Polytechnic Institute :: napatel at wpi.edu
  70. Tobias Penzkofer :: Brigham and Women's Hospital :: pt at bwh.harvard.edu
  71. Rudolph Pienaar :: Boston Children's Hospital :: Rudolph.Pienaar at childrens.harvard.edu
  72. Steve Pieper :: Isomics, Inc. :: pieper at isomics.com
  73. Csaba Pinter :: Queen's University :: pinter at cs.queensu.ca
  74. William Plishker :: IGI Technologies :: will at igitechnologies.com
  75. Sonia Pujol :: Brigham and Women's Hospital :: spujol at bwh.harvard.edu
  76. Adam Rankin :: Queen's University :: rankin at cs.queensu.ca
  77. Nathaniel Reynolds :: Massachusetts General Hospital :: reynolds at nmr.mgh.harvard.edu
  78. Raul San Jose Estepar :: Brigham and Women's Hospital :: rjosest at bwh.harvard.edu
  79. Peter Savadjiev :: Brigham and Women's Hospital :: petersv at bwh.harvard.edu
  80. Tobias Schroeder :: General Electric :: tobias.schroeder at ge.com
  81. Anuja Sharma :: University of Utah :: anuja at cs.utah.edu
  82. Gregory Sharp :: Massachusetts General Hospital :: gcsharp at partners.org
  83. Nadya Shusharina :: Massachusetts General Hospital :: nshusharina at partners.org
  84. Sebastian Tauscher :: Leibniz Universität Hannover :: sebastian.tauscher at imes.uni-hannover.de
  85. Clare Tempany :: Brigham and Women's Hospital :: ctempanyafdhal at partners.org
  86. Gaurie Tilak :: Brigham and Women's Hospital :: gaurie_tilak at hms.harvard.edu
  87. Matthew Toews :: Brigham and Women's Hospital :: mt at bwh.harvard.edu
  88. Junichi Tokuda :: Brigham and Women's Hospital :: tokuda at bwh.harvard.edu
  89. Tamas Ungi :: Queen's University :: ungi at cs.queensu.ca
  90. Adriana Vilchis González :: Universidad Autonoma del Estado de Mexico :: hvigady at hotmail.com
  91. Cyrill von Tiesenhausen :: KUKA Laboratories :: cyrill.tiesenhausen at kuka.com
  92. Kirby Vosburgh :: Brigham and Women's Hospital :: kirby at bwh.harvard.edu
  93. Christian Wachinger :: Massachusetts Institute of Technology :: wachinge at mit.edu
  94. Bo Wang :: University of Utah :: bowang at sci.utah.edu
  95. Demian Wassermann :: Brigham and Women's Hospital :: demian at bwh.harvard.edu
  96. David Welch :: University of Iowa :: david-welch at uiowa.edu
  97. Sandy Wells :: Brigham and Women's Hospital :: sw at bwh.harvard.edu
  98. Jason White :: Brigham and Women's Hospital :: white at bwh.harvard.edu
  99. Alexander Yarmarkovich :: Isomics, Inc. :: alexy at bwh.harvard.edu
  100. Kitaro Yoshimitsu :: Brigham and Women's Hospital :: kitarof1 at bwh.harvard.edu
  101. Yang Yu :: Rutgers University :: yyu at cs.rutgers.edu
  102. Paolo Zaffino :: Magna Græcia University of Catanzaro :: p.zaffino at unicz.it
  103. Luping Fang Zhejiang :: University of Technology, China :: flp at zjut.edu.cn
  104. Lilla Zollei :: Massachusetts General Hospital :: lzollei at nmr.mgh.harvard.edu