Difference between revisions of "2014 Summer Project Week"

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__NOTOC__
 
__NOTOC__
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Back to [[Events]]
  
 
[[image:PW-MIT2014.png|300px]]
 
[[image:PW-MIT2014.png|300px]]
  
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=Welcome to the web page for the 19th Project Week!=
  
Dates: June 23-27, 2014.
+
[[image:Projectweek-2014-06-23-IMG 0837.JPG|800px|opening session]]
  
Location: MIT, Cambridge, MA.
+
[[image:Projectweek-19.5.JPG|800px|opening session]]
  
 +
==Summary==
 +
The most recent project week was the 19th event in the series. It was held June 23-27, 2014 at MIT. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, MIT, WPI, University of Utah, University of Iowa, University of Michigan, University of North Carolina at Chapel Hill, Queen’s University, University of Sydney, University Magna Graecia of Catanzaro, Old Dominion University, University of CA San Diego, Johns Hopkins University, Stony Brook University, University of Washington, NIH, Seattle Children's Research Institute, University College Cork, Ben-Gurion University, Princess Margaret Cancer Centre) and 4 companies (GE Global Research, Kitware, Fraunhofer MEVIS, Isomics Inc).
  
 +
A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
 +
==Logistics==
 +
*Dates: June 23-27, 2014.
 +
*Location: MIT, Cambridge, MA.
 
==Agenda==
 
==Agenda==
 
 
{|border="1"
 
{|border="1"
 
|-style="background:#b0d5e6;color:#02186f"  
 
|-style="background:#b0d5e6;color:#02186f"  
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|-
 
|-
 
|
 
|
|bgcolor="#dbdbdb"|'''Project Presentations'''
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|bgcolor="#dbdbdb"|'''Project Presentations'''  
 
|bgcolor="#6494ec"|'''NA-MIC Update Day'''
 
|bgcolor="#6494ec"|'''NA-MIC Update Day'''
 
|
 
|
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|bgcolor="#ffffaa"|Breakfast
 
|bgcolor="#ffffaa"|Breakfast
 
|bgcolor="#ffffaa"|Breakfast
 
|bgcolor="#ffffaa"|Breakfast
|bgcolor="#ffffaa"|Breakfast
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|bgcolor="#ffffaa"|Breakfast (Stata Building 4th Floor R&D Common Dining Area)
 
|-
 
|-
 
|bgcolor="#ffffdd"|'''9am-12pm'''
 
|bgcolor="#ffffdd"|'''9am-12pm'''
 
|
 
|
 
|'''10-11:30am''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: DICOM|DICOM]] (Steve Pieper)
 
|'''10-11:30am''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: DICOM|DICOM]] (Steve Pieper)
[[MIT_Project_Week_Rooms|Grier Room (Left)]]  
+
[[MIT_Project_Week_Rooms#Star|Star]]
 
|
 
|
'''9:00-10:30am''' [[2014_Tutorial_Contest|Tutorial Contest Presentations (Sonia Pujol)]] <br>
+
'''11am-12noon''' Breakout Session: [[2014_Project_Week_Breakout_Session: Slicer for users| Slicer for users]] (Ron Kikinis)
 +
<br>
 +
|'''9:00-10:30am''' [[2014_Tutorial_Contest|Tutorial Contest Presentations (Sonia Pujol)]] <br>
 
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 
<br>----------------------------------------<br>
 
<br>----------------------------------------<br>
|'''10am-12pm: <font color="#4020ff">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: IGT Neuro|Image-Guided Therapy - Neurosurgery]] (Alexandra Golby, Tina Kapur) <br>
+
'''10am-12pm: <font color="#4020ff">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: IGT Neuro|Image-Guided Therapy - Neurosurgery]] (Alexandra Golby, Tina Kapur) <br>
 
[[MIT_Project_Week_Rooms#Star|Star]]
 
[[MIT_Project_Week_Rooms#Star|Star]]
<br>----------------------------------------<br>
+
|'''10am-12pm:''' [[#Projects|Project Progress Updates]] (Stata Building 4th Floor R&D Common Dining Area)
'''10-11am''' Breakout Session: [[2014_Project_Week_Breakout_Session: Slicer for users| Slicer for users]] (Ron Kikinis)
 
<br>
 
 
<br>----------------------------------------<br>
 
<br>----------------------------------------<br>
 
'''12pm''' [[Events:TutorialContestJune2014|Tutorial Contest Winner Announcement]]
 
'''12pm''' [[Events:TutorialContestJune2014|Tutorial Contest Winner Announcement]]
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
+
(Stata Building 4th Floor R&D Common Dining Area)
|'''10am-12pm:''' [[#Projects|Project Progress Updates]]
+
 
 
|-
 
|-
 
|bgcolor="#ffffdd"|'''12pm-1pm'''
 
|bgcolor="#ffffdd"|'''12pm-1pm'''
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The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools.  The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects.  On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
 
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools.  The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects.  On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
 
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
 
 
  
 
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
 
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
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* [[2014_Project_Week_Template | Template for project pages]]
 
* [[2014_Project_Week_Template | Template for project pages]]
  
 +
==Image-Guided Therapy==
 +
 +
* [[2014_Summer_Project_Week:SlicerIGT|SlicerIGT extension: testing, tutorials, website]] (Tamas Ungi, Nobuhiko Hata, Tina Kapur)
 +
* [[2014_Summer_Project_Week:Robot_Control_With_OpenIGTLink | Robot Control With OpenIGTLink]]  ( Gregory Fischer WPI, Nirav Patel WPI, Nobuhiko Hata BWH)
 +
*[[2014_Summer_Project_Week:Visual_Guidance_for_Neurosurgery_US_Recording  |Visual Guidance for Neurosurgery US Data Recording
 +
]] (Alireza, Isaiah, Rahul, Matthew, Tina, Steve, Sandy, Alex Golby)
 +
* [[Gestural Point of Care Interface for IGT]] (Saskia, Franklin, Steve, Tobias, Andras)
 +
* [[2014_Summer_Project_Week:Intelligent_Steering | Steered Image Registration using Intelligent Interfaces for Minimal User Interaction]] (Marcel Prastawa, Jim Miller, Steve Pieper)
 +
* [[2014_Summer_Project_Week:CBC_3D_I2MConversion | CBC 3D I2M Conversion ]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov, Ron Kikinis, Nikos Chrisochoides)
 +
* [[2014_Summer_Project_Week:An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift | An ITK Implementation of Physics-Based Non-Rigid Registration Method for Brain Shift]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz, Ron Kikinis, Nikos Chrisochoides)
 +
* [[2014_Summer_Project_Week:Open_source_electromagnetic_trackers_usingOpenIGTLink| Open-source Electromagnetic Trackers using OpenIGTLink]] (Peter Traneus Anderson, Tina Kapur, Sonia Pujol)
 +
*[[2014_Summer_Project_Week:Intraoperative_Registration_of_preoperative_CT_and_C-arm_CT_of_the_lung | Intraoperative Registration of Preoperative CT and C-arm CT of the Lung]] (Katharina Breininger, Jay Jagadeesan)
 +
*[[2014_Summer_Project_Week:Image guided neuroendoscope | Making Realistic Clinical Story Board for Image-guided Skull Base Endoscopic Surgery]] (Keryn Palmer, Nobuhiko Hata)
 +
*[[2014_Summer_Project_Week:PathExplorer_Extension | PathExplorer Extension (code refactoring, documentation, tutorial)]] (Laurent Chauvin, Tamas Ungi, Nobuhiko Hata)
 +
*[[2014_Summer_Project_Week:MR-Ultrasound_Registration_for_Prostate_Interventions | MR-Ultrasound Registration for Prostate Interventions]] (Andriy Fedorov, Chenxi Zhang, Andras Lasso)
 +
*[[2014_Summer_Project_Week:Surface_approximation_from_contour_points | Surface Approximation from Contour Points]] (Chenxi Zhang, Csaba Pinter, Andrey Fedorov)
 +
*[[2014_Summer_Project_Week:Cortical_Dysplasia_Identification | Tools for Dysplasia Identification in Epilepsy]] (Luiz Murta; Emylin Souza; Tina Kapur; Ron Kikinis)
 +
*[[2014_Summer_Project_Week:Focused_Ultrasound_Pressure_Sensor| Focused Ultrasound Pressure Sensor  ]] (Robin Kouver, Nassim Alikacem)
 +
*[[2014_Summer_Project_Week:Focused_Ultrasound_Positioner| Focused Ultrasound Positioner  ]] (Nassim Alikacem, Robin Kouver)
 +
*[[2014_Summer_Project_Week:Software_Platform_for_Robotic_Surgery|Searching for Software Platform for Robotic Surgery]] (Yangming Li)
 +
*[[2014_Summer_Project_Week:mipiX | Rapid Visualization of Large Image Collections]] (Adrian, Ramesh, Polina)
 +
*[[2014_Summer_Project_Week:Ventriculostomy_Guidance_Transcranial_Ultrasound  |Ventriculostomy Guidance with Transcranial Ultrasound
 +
]] (Jason White, Kirby Vosburgh, Can Meral, Alex Golby)
 +
*[[2014_Summer_Project_Week:EM-tracked_prostate_US_calibration_with_Plus|Calibration of EM-tracked US Acquisition using Plus]] (Andrey Fedorov, Tamas Ungi, Andras Lasso, Jay Jagadeesan)
  
 
==Huntington's Disease==
 
==Huntington's Disease==
 
*[[2014_Summer_Project_Week:FiberTractDispersion| Fiber Tract Dispersion and UKF Tractography]] (Peter Savadjiev, Yogesh Rathi, Hans Johnson, C-F Westin)
 
*[[2014_Summer_Project_Week:FiberTractDispersion| Fiber Tract Dispersion and UKF Tractography]] (Peter Savadjiev, Yogesh Rathi, Hans Johnson, C-F Westin)
 
+
*[[2014_Summer_Project_Week:LongitudinalSeg| 4D Segmentation for Longitudinal Consistency ]] (Regina Kim, James Fishbaugh, Guido Gerig, Hans Johnson)
==Head and Neck Cancer==
+
*[[2014_Summer_Project_Week:AutomatedSegmentationQA | Automated Prior-driven Segmentation QA]] (Dave Welch, Hans Johnson)
*[[2014_Summer_Project_Week:Interactive_DIR| Interactive DIR]] (Greg Sharp, Ivan Kolesov, Allen Tannenbaum)
+
*[[2014_Summer_Project_Week:ManualSegmentationQA | Manual Segmentation QA]] (Dave Welch, Hans Johnson)
*[[2014_Summer_Project_Week:DIR_validation_tools| DIR validation tools]] (Greg Sharp, Ivan Kolesov, Allen Tannenbaum)
+
*[[2014_Summer_Project_Week:UpdateBRAINSTools | Update BRAINSTools (BRAINSFit and DWIConvert) in Slicer]] (Hans Johnson, Dave Welch, Kent Williams, JC, Brad)
*[[2014_Summer_Project_Week:Upload_HN_data| Upload H&N data]] (Greg Sharp, Paolo Zaffino)
+
*[[2014_Summer_Prioject_Week:AgatstonScoring | Cardiac Agatston Scoring Extension]] (Jessica Forbes, Hans Johnson)
*[[2014_Summer_Project_Week:DIR_stop_and_restart| DIR stop and restart]] (Paolo Zaffino, Greg Sharp)
 
*[[2014_Summer_Project_Week:InteractiveRegistration| Interactive Registration]] (Ivan Kolesov, Greg Sharp, Allen Tannenbaum)
 
*[[2014_Summer_Project_Week:External Beam Planning| External Beam Planning]] (Kevin Wang, Greg Sharp, Maxime Desplanques)
 
*[[2014_Summer_Project_Week:Proton_pencil_beam| Proton pencil beam dose calculation]] (Maxime Desplanques, Kevin Wang, Greg Sharp)
 
  
 
==TBI==
 
==TBI==
*[[2014_Summer_Project_Week:TBI_Segmentation| Interactive segmentation for traumatic brain injury ]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)
+
*[[2014_Summer_Project_Week:TBI_Segmentation| Interactive Segmentation for Traumatic Brain Injury ]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)
 
 
==Slicer4 Extensions==
 
 
 
*[[2014_Summer_Project_Week:Multidim Data| Multidimensional Data]] (Kevin Wang, Andras Lasso)
 
*[[2014_Summer_Project_Week:DICOM-SRO import| DICOM-SRO import]] (Kevin Wang)
 
*[[2014_Summer_Project_Week:PLM_engineering| Plastimatch extension re-engineering]] (Greg Sharp, Paolo Zaffino, Andras, Csaba, Kevin)
 
  
 
==Stroke==
 
==Stroke==
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*[[2014_Summer_Project_Week:Stroke-SuperResolution | Stroke Super Resolution]] (Adrian Dalca, Ramesh Sridharan, Polina Golland)
 
*[[2014_Summer_Project_Week:Stroke-SuperResolution | Stroke Super Resolution]] (Adrian Dalca, Ramesh Sridharan, Polina Golland)
  
 +
==Cardiac==
 +
*[[2014_Summer_Project_Week:Cardiac-Congenital | MRI Segmentation for Congenital Heart Disease]] (Danielle Pace, Adrian Dalca, Polina Golland)
  
==Image-Guided Therapy==
+
==Chronic Obstructive Pulmonary Disease, Lung, Chest ==
 
 
* SlicerIGT extension: testing, tutorials, website (Tamas Ungi, Nobuhiko Hata)
 
* [[Gestural Point of Care Interface for IGT]] (Saskia, Franklin, Steve, Tobias)
 
*[[2014_Summer_Project_Week:MR-Ultrasound_Registration_for_Prostate_Interventions | MR-Ultrasound Registration for Prostate Interventions]] (Chenxi Zhang, Andriy Fedorov, Andras)
 
*[[2014_Summer_Project_Week:Surface_approximation_from_contour_points | Surface approximation from contour points]] (Chenxi Zhang, Csaba Pinter, Andrey Fedorov)
 
* [[2014_Summer_Project_Week:Intelligent_Steering | Steered image registration using intelligent interfaces for minimal user interaction]] (Marcel Prastawa, Jim Miller, Steve Pieper)
 
* [[2014_Summer_Project_Week:Image To Mesh Conversion for Brain MRI | Image To Mesh Conversion for Brain MRI]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov, Ron Kikinis, Nikos Chrisochoides)
 
* [[2014_Summer_Project_Week:An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift | An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz, Ron Kikinis, Nikos Chrisochoides)
 
* [[2014_Summer_Project_Week:Robot_Control_With_OpenIGTLink | Robot Control With OpenIGTLink]]  ( Gregory Fischer(WPI), Nirav Patel(WPI), Nobuhiko Hata (BWH) )
 
* [[2014_Summer_Project_Week:Open_source_electromagnetic_trackers_usingOpenIGTLink| Open-source electromagnetic trackers using OpenIGTLink]] (Peter Traneus Anderson, Tina Kapur, Sonia Pujol)
 
  
==Chronic Obstructive Pulmonary Disease ==
+
*[[2014_Summer_Project_Week: Pectoralis muscle segmentation| Pectoralis Muscle Segmentation]] (Rola Harmouche, James Ross, Raul San Jose)
 +
*[[2014_Summer_Project_Week:Image_Registration_with_Sliding_Motion_Constraints | Image Registration with Sliding Motion Constraints]] (Alexander Derksen, Kanglin Chen, Gregory Sharp)
 +
*[[2014_Summer_Project_Week:Multiscale_Non_Local_Means_filter_(NLM)_for_chest_CT_images | Multiscale Non Local Means Filter (NLM) for chest CT images]] (Pietro Nardelli, Raul San Jose)
  
*[[2014_Summer_Project_Week: Pectoralis muscle segmentation| Pectoralis muscle segmentation]] (Rola Harmouche, James Ross, Raul San Jose)
+
==Head and Neck Cancer / Radiotherapy ==
 +
*[[2014_Summer_Project_Week:SlicerRT scalarbar vtk6 migration| ScalarBar vtk6 Migration]] (Kevin Wang, Nicole)
 +
*[[2014_Summer_Project_Week:Upload_HN_data| Upload H&N data]] (Greg Sharp, Paolo Zaffino)
 +
*[[2014_Summer_Project_Week:DIR_stop_and_restart| DIR Stop and Restart]] (Paolo Zaffino, Greg Sharp, Steve Pieper)
 +
*[[2014_Summer_Project_Week:Proton_pencil_beam| Proton Pencil Beam Dose Calculation]] (Maxime Desplanques, Kevin Wang, Greg Sharp)
  
 
==[http://qiicr.org QIICR]==
 
==[http://qiicr.org QIICR]==
* [[2014_Summer_Project_Week: RWV mapping support|Real world value mapping support]] (Andrey, Ethan, Andras, Steve, Jim, ...)
+
* [[2014_Summer_Project_Week: RWV mapping support|Real World Value Mapping Support]] (Ethan, Andrey, Andras, Steve, Jim)
* [[2014_Summer_Project_Week: CLI Derived DICOM Data| Proper formatting of DICOM Derived Data from CLI]] (Steve, Andrey, Jim, {Michael and David remotely})
+
* [[2014_Summer_Project_Week: CLI Derived DICOM Data| Proper Formatting of DICOM Derived Data from CLI]] (Steve, Andrey, Jim, {Michael and David remotely})
* [[2014_Summer_Project_Week: DICOM SEG conversion to support archival of QIN Grand challenges results|DICOM SEG conversion to support archival of QIN Grand challenges results]] (Jayashree, Andrey, Steve, {David remotely})
+
* [[2014_Summer_Project_Week: DICOM SEG Conversion to Support Archival of QIN Grand Challenges Results|DICOM SEG Conversion to Support Archival of QIN Grand Challenges Results]] (Jayashree, Andrey, Steve, {David remotely})
 
+
* [[2014_Summer_Project_Week: ColorBar support|Color Bar Support for Slice Views]] (Alireza, Andrey, Steve, Kevin)
==Infrastructure==
+
* [[2014_Summer_Project_Week: Slicer DICOM|Slicer DICOM Improvements]] (Alireza, Andrey, Steve, Ron)
*Slicer 4.4 Release (JC, Steve, Nicole)
 
* [[2014_Summer_Project_Week: Chronicle| Chronicle]] (Steve)
 
* [[2014_Summer_Project_Week: Volume Registration|Volume Registration]] (Steve, Greg, Marcel, Jim)
 
* [[2014_Summer_Project_Week:Markups | Markups]] (Nicole Aucoin)
 
*[[2014_Summer_Project_Week:Pluggable Label Statistics |Pluggable Label Statistics]] (Andrey , Ethan, Steve, Brad, Jim? Dirk?)
 
*[[2014_Summer_Project_Week:Subject_hierarchy_integration | Subject hierarchy integration]] (Csaba, Steve, Jc, Andras?, ?)
 
*[[2014_Summer_Project_Week:Contours | Contours]] (Adam Rankin, Csaba, Andras, Steve, Jc, ?)
 
*[[2014_Summer_Project_Week:Parameter Node Serialization | Parameter Node Serialization]] (Kevin Wang, Andras, Steve, Jim, Csaba, ?)
 
*[[2014_Summer_Project_Week:Self-tests for non-linear transforms | Self-tests for non-linear transforms]] (Xining Du)
 
  
 
==Feature Extraction==
 
==Feature Extraction==
 
*[[2014_Summer_Project_Week:Tumor_DCE-MRI_Segmentation | Breast Tumor Segmentation]] (Vivek Narayan, Jay Jagadeesan)
 
*[[2014_Summer_Project_Week:Tumor_DCE-MRI_Segmentation | Breast Tumor Segmentation]] (Vivek Narayan, Jay Jagadeesan)
 
*[[2014_Summer_Project_Week:Tumor_Heterogeneity_Analysis | Breast Tumor Heterogeneity Analysis]] (Vivek Narayan, Jay Jagadeesan)
 
*[[2014_Summer_Project_Week:Tumor_Heterogeneity_Analysis | Breast Tumor Heterogeneity Analysis]] (Vivek Narayan, Jay Jagadeesan)
*Quantitative image feature extraction in Non-Small Cell Lung Cancer (Hugo Aerts)
+
*[[2014_Summer_Project_Week: Quantitative image feature extraction | Quantitative Image Feature Extraction in Non-Small Cell Lung Cancer]] (Hugo Aerts)
*[[2014_Summer_Project_Week:Invariant_Feature_Extraction_Slicer | Invariant Feature Methods in Slicer]] (Matthew Toews, Nicole Aucoin, Sandy Wells)
+
*[[2014_Summer_Project_Week:Invariant_Feature_Extraction_Slicer | Invariant Feature Methods in Slicer]] (Matthew Toews, Nicole Aucoin, Hans Johnson, Sandy Wells)
  
==Other==
+
==Additional Brain Image Analysis==
*[[2014_Summer_Project_Week:Slicer_Murin_Shape_Analysis | Shape Analysis for the developing murine skull]] (Murat Maga, Ryan Young, Seattle Chidren's Hospital).
+
*[[2014_Summer_Project_Week:Slicer_Murin_Shape_Analysis | Shape Analysis for the Developing Murine Skull]] (Murat Maga, Ryan Young, Seattle Chidren's Hospital).
*[[2014_Summer_Project_Week:Slicer_LDDMM_Shape_Analysis | Slicer Interface to LDDMM shape anlaysis]] (Saurabh Jain, JHU; Steve Pieper, Isomics; Josh Cates, SCI, Utah; Hans Johnson, Iowa; Martin Styner, UNC)
+
*[[2014_Summer_Project_Week:Slicer_LDDMM_Shape_Analysis | Slicer Interface to LDDMM Shape Anlaysis]] (Saurabh Jain, JHU; Steve Pieper, Isomics; Josh Cates, SCI, Utah; Hans Johnson, Iowa; Martin Styner, UNC)
*[[2014_Summer_Project_Week:Image_Registration_with_Sliding_Motion_Constraints | Image Registration with Sliding Motion Constraints]] (Alexander Derksen, Kanglin Chen, Gregory Sharp)
 
 
*[[2014_Summer_Project_Week:Atlas Selection | Atlas Selection]] (Kanglin Chen, Gregory Sharp)
 
*[[2014_Summer_Project_Week:Atlas Selection | Atlas Selection]] (Kanglin Chen, Gregory Sharp)
*[[2014_Summer_Project_Week:Multiscale_Non_Local_Means_filter_(NLM)_for_chest_CT_images | Multiscale Non Local Means filter (NLM) for chest CT images]] (Pietro Nardelli, University College Cork (UCC), Ireland)
 
*[[2014_Summer_Project_Week:Intraoperative_Registration_of_preoperative_CT_and_C-arm_CT_of_the_lung | Intraoperative Registration of preoperative CT and C-arm CT of the lung]] (Katharina Breininger, Jay Jagadeesan)
 
 
*[[2014_Summer_Project_Week:CAD_Toolbox_for_Neurological_Disorders | CAD Toolbox for Neurological Disorders]] (Sidong Liu, Siqi Liu, Fan Zhang, Yang Song, Weidong Cai, Sonia Pujol, Ron Kikinis)
 
*[[2014_Summer_Project_Week:CAD_Toolbox_for_Neurological_Disorders | CAD Toolbox for Neurological Disorders]] (Sidong Liu, Siqi Liu, Fan Zhang, Yang Song, Weidong Cai, Sonia Pujol, Ron Kikinis)
*[[2014_Summer_Project_Week:Longitudinal_patient_specific_DTI_analysis | Longitudinal patient-specific DTI analysis using Slicer for neonatal asphyxia]] (Anuja Sharma, SCI, Utah; Francois Budin, UNC; Martin Styner, UNC; Guido Gerig, SCI, Utah)
+
*[[2014_Summer_Project_Week:Longitudinal_patient_specific_DTI_analysis | Longitudinal Patient-specific DTI Analysis using Slicer for Neonatal Asphyxia]] (Anuja Sharma, SCI, Utah; Francois Budin, UNC; Martin Styner, UNC; Guido Gerig, SCI, Utah)
*[[2014_Summer_Project_Week:mipiX | Rapid Visualization of Large Image Collections]] (Adrian, Ramesh, Polina)
+
*[[2014_Summer_Project_Week:Pipeline_Visualization | Pipeline Visualization]] (Ramesh, Adrian, Polina)
 +
 
 +
==Slicer4 Extensions==
 +
 
 +
*[[2014_Summer_Project_Week:Multidim Data| Multidimensional Data]] (Andras Lasso, Kevin Wang)
 +
*[[2014_Summer_Project_Week:DICOM-SRO import/export| DICOM-SRO import/export]] (Kevin Wang, Greg Sharp)
 +
*[[2014_Summer_Project_Week:DRAMMS_Slicer| Integrating DRAMMS Deformable Registration into Slicer]] (Yangming Ou, Steve Pieper, Andriy Fedorov, Tina Kapur, Christos Davatzikos, Ron Kikinis, Randy Gollub, Jayashree Kalpathy-Cramer)
 +
 
 +
==TMJOA RO1 - Collaboration with NAMIC==
 +
*[[2014_Summer_Project_Week:TMJOA| TMJOA]] (Francois Budin, Beatriz Paniagua, Lucia Cevidanes, Nicole Aucoin, Steve Pieper, Jean-Christophe Fillion-Robin, Alex Yarmarkovich)
 +
 
 +
==Infrastructure==
 +
* [[2014_Summer_Project_Week: Chronicle| Chronicle]] (Steve)
 +
* [[2014_Summer_Project_Week: Factory and Testing Process Post NA-MIC| Post NA-MIC Factory and Testing]] (Steve, Jc, Ron)
 +
* [[2014_Summer_Project_Week: Volume Registration|Volume Registration]] (Steve, Greg, Marcel, Jim)
 +
* [[2014_Summer_Project_Week:Markups | Markups]] (Nicole Aucoin)
 +
*[[2014_Summer_Project_Week:Pluggable Label Statistics |Pluggable Label Statistics]] (Andrey , Ethan, Steve, Brad, Jim)
 +
*[[2014_Summer_Project_Week:Subject_hierarchy_integration | Subject Hierarchy Integration]] (Csaba, Steve, Jc, Andras)
 +
*[[2014_Summer_Project_Week:Contours | Contours]] (Adam Rankin, Csaba, Andras, Steve, Jc)
 +
*[[2014_Summer_Project_Week:Parameter Node Serialization | Parameter Node Serialization]] (Kevin Wang, Steve, Jim, Jc, Matt, Nicole)
 +
*[[2014_Summer_Project_Week:Self-tests for non-linear transforms | Self-tests for Non-linear Transforms]] (Xining Du)
 +
*[[2014_Summer_Project_Week:Slicer Tutorial Updates | Slicer Tutorial Updates]] (Parth Amin, Farukh Kohistan, Sonia Pujol)
  
 
== '''Logistics''' ==
 
== '''Logistics''' ==
Line 187: Line 212:
 
*'''Room sharing''': If interested, add your name to the list:  [[2014_Summer_Project_Week/RoomSharing|here]]
 
*'''Room sharing''': If interested, add your name to the list:  [[2014_Summer_Project_Week/RoomSharing|here]]
  
== '''Registrants''' ==
+
==Registrants==
  
 
Do not add your name to this list - it is maintained by the organizers based on your paid registration.  ([https://www.regonline.com/namic2014summerprojectweek  Please click here to register.])
 
Do not add your name to this list - it is maintained by the organizers based on your paid registration.  ([https://www.regonline.com/namic2014summerprojectweek  Please click here to register.])
  
#Hugo Aerts, Dana Farber/Harvard, hugo_aerts@dfci.harvard.edu
+
# Hugo Aerts :: Dana Farber Cancer Institute :: hugo_aerts at dfci.harvard.edu
#Nassim Alikacem, Brigham & Women's Hospital, Nassim.Alikacem@gmail.com
+
# Nassim Alikacem :: Brigham and Women's Hospital :: Nassim.Alikacem at gmail.com
#Peter Anderson, retired, traneus@verizon.net
+
# Parth Amin :: Wentworth Institute of Technology :: aminp at wit.edu
#Nicole Aucoin, Brigham & Women's Hospital, nicole@bwh.harvard.edu
+
# Peter Anderson :: Retired :: traneus at verizon.net
#Eva Breininger, Brigham & Women's Hospital, ebreininger@partners.org
+
# Nicole Aucoin :: Brigham and Women's Hospital :: nicole at bwh.harvard.edu
#Francois Budin, NIRAL-UNC, fbudin@unc.edu
+
# Eva Breininger :: Brigham and Women's Hospital :: ebreininger at partners.org
#Saskia Camps, SPL, saskiacamps@gmail.com
+
# Francois Budin :: University of North Carolina :: fbudin at unc.edu
#Lucia Cevidanes, University of Michigan, luciacev@umich.edu
+
# Saskia Camps :: Brigham and Women's Hospital :: saskiacamps at gmail.com
#Laurent Chauvin, SPL, lchauvin@bwh.harvard.edu
+
# Lucia Cevidanes :: University of Michigan :: luciacev at umich.edu
#Kanglin Chen, Fraunhofer MEVIS, kanglin.chen@mevis.fraunhofer.de
+
# Laurent Chauvin :: Brigham and Women's Hospital :: lchauvin at bwh.harvard.edu
#Adrian Dalca, MIT CSAIL, adalca@mit.edu
+
# Kanglin Chen :: Fraunhofer MEVIS, Bremen :: kanglin.chen at mevis.fraunhofer.de
#Alexander Derksen, Fraunhofer MEVIS, alexander.derksen@mevis.fraunhofer.de
+
# Adrian Dalca :: Massachusetts Institute of Technology :: adalca at MIT.EDU
#Maxime Desplanques, MGH/Politecnico di Milano, maxime.desplanques@cnao.it
+
# Alexander Derksen :: Fraunhofer MEVIS, Bremen :: alexander.derksen at mevis.fraunhofer.de
#Fotis Drakopoulos, Old Dominion University, fdrakopo@gmail.com
+
# Maxime Desplanques :: Massachusetts General Hospital :: maxime.desplanques at cnao.it
#Sneha Durgapal, Brigham & Women's Hospital, durgapalsneha@gmail.com
+
# Fotis Drakopoulos :: Old Dominion University :: fdrakopo at gmail.com
#Andriy Fedorov, BWH, fedorov@bwh.harvard.edu
+
# Sneha Durgapal :: Brigham and Women's Hospital :: durgapalsneha at gmail.com
#Jean-Christophe Fillion-Robin, Kitware, jchris.fillionr@kitware.com
+
# Andriy Fedorov :: Brigham and Women's Hospital :: fedorov at bwh.harvard.edu
#James Fishbaugh, SCI Institute/University of Utah, jfishbaugh@gmail.com
+
# Jean-Christophe Fillion-Robin :: Kitware, Inc. :: jchris.fillionr at kitware.com
#Jessica Forbes, University of Iowa, jessica-forbes@uiowa.edu
+
# James Fishbaugh :: University of Utah :: jfishbau at sci.utah.edu
#Polina Golland, MIT CSAIL, polina@csail.mit.edu
+
# Jessica Forbes :: University of Iowa :: jessica-forbes at uiowa.edu
#Jeffrey Grethe, University of CA San Diego, jgrethe@ncmir.ucsd.edu
+
# Polina Golland :: Massachusetts Institute of Technology :: polina at csail.mit.edu
#Rola Harmouche, Brigham & Women's Hospital, rolaharmouche@gmail.com
+
# Jeffrey Grethe :: UCSD :: jgrethe at ncmir.ucsd.edu
#Nobuhiko Hata, Brigham & Women's Hospital, hata@bwh.harvard.edu
+
# Rola Harmouche :: Brigham and Women's Hospital :: rolaharmouche at gmail.com
#Saurabh Jain, Johns Hopkins University, saurabh@cis.jhu.edu
+
# Nobuhiko Hata :: Brigham and Women's Hospital :: hata at bwh.harvard.edu
#Hans Johnson, University of Iowa, hans-johnson@uiowa.edu
+
# Jayender Jagadeesan :: Brigham and Women's Hospital :: jayender at bwh.harvard.edu
#Jayashree Kalpathy-Cramer, MGH, kalpathy@nmr.mgh.harvard.edu
+
# Saurabh Jain :: Johns Hopkins University :: saurabh at cis.jhu.edu
#Tina Kapur, BWH/Harvard Medical School, tkapur@bwh.harvard.edu
+
# Hans Johnson :: University of Iowa :: hans-johnson at uiowa.edu
#Ron Kikinis, HMS, kikinis@bwh.harvard.edu
+
# Jayashree Kalpathy-Cramer :: Massachusetts General Hospital :: kalpathy at nmr.mgh.harvard.edu
#Regina Kim, University of Iowa, eunyoung-kim@uiowa.edu
+
# Tina Kapur :: Brigham and Women's Hospital :: tkapur at bwh.harvard.edu
#Franklin King, Queen's University, franklin.king@queensu.ca
+
# Ron Kikinis :: Brigham and Women's Hospital :: kikinis at bwh.harvard.edu
#Tassilo Klein, SPL/BWH, TJKlein@bwh.harvard.edu
+
# Eun Young Regina Kim :: University of Iowa :: eunyoung-kim at uiowa.edu
#Farukh Kohistani, BWH Radiology, kohistan@bc.edu
+
# Franklin King :: Queen's University :: franklin.king at queensu.ca
#Robin Kouver, BWH/SPL, r.kouver@gmail.com
+
# Tassilo Klein :: Brigham and Women's Hospital :: TJKlein at bwh.harvard.edu
#Andreas Lasso, PerkLab - Queen's University, lasso@queensu.ca
+
# Farukh Kohistani :: Brigham and Women's Hospital :: kohistan at bc.edu
#Yangming Li, University of Washington, ymli81@uw.edu
+
# Ivan Kolesov :: Stony Brook University :: ivan.kolesov1 at gmail.com
#Sidong Liu, SPL/BWH, sliu@bwh.harvard.edu
+
# Robin Kouver :: Brigham and Women's Hospital :: r.kouver at gmail.com
#Siqi Liu, University of Sydney, sliu4512@uni.sydney.edu.au
+
# Andras Lasso :: Queen's University :: lasso at queensu.ca
#Bradley Lowekamp, National Institutes of Health, blowekamp@mail.nih.gov
+
# Yangming Li :: University of Washington :: ymli81 at uw.edu
#Murat Maga, Seattle Children's Research Institute, maga@uw.edu
+
# Sidong Liu :: University of Sydney :: sliu at bwh.harvard.edu
#Katie Mastrogiacomo, SPL/BWH, kmast@bwh.harvard.edu
+
# Siqi Liu :: University of Sydney :: sliu4512 at uni.sydney.edu.au
#Alireza Mehrtash, SPL/BWH, mehrtash@bwh.harvard.edu
+
# Bradley Lowekamp :: National Library of Medicine :: blowekamp at mail.nih.gov
#Dominik Meier, Brigham & Women's Hospital, meier@bwh.harvard.edu
+
# Murat Maga :: Seattle Children's Research Institute :: maga at uw.edu
#Jim Miller, GE Research, millerjv@ge.com
+
# Katie Mastrogiacomo :: Brigham and Women's Hospital :: kmast at bwh.harvard.edu
#Luiz Otavio Murta Junor, SPL/BWH, lmurta@partners.org
+
# Alireza Mehrtash :: Brigham and Women's Hospital :: mehrtash at bwh.harvard.edu
#Vivek Narayan, NCIGT, narayan.vivek9@gmail.com
+
# Dominik Meier :: Brigham and Women's Hospital :: meier at bwh.harvard.edu
#Pietro Nardelli, University College Cork, pietro@bwh.harvard.edu
+
# James Miller :: General Electric :: millerjv at ge.com
#Yangming Ou, MGH, yangming.ou@uphs.upenn.edu
+
# Luiz Otavio Murta :: Brigham and Women's Hospital :: lmurta at partners.org
#Danielle Pace, MIT CSAIL, dfpace@mit.edu
+
# Vivek Narayan :: Brigham and Women's Hospital :: narayan.vivek9 at gmail.com
#Keryn Palmer, Brigham & Women's Hospital, kpalmer5@partners.org
+
# Pietro Nardelli :: University College Cork :: pietro at bwh.harvard.edu
#Nirav Patel, WPI, napatel@wpi.edu
+
# Isaiah Norton :: Brigham and Women's Hospital :: isaiah.norton at gmail.com
#Tobias Penzkofer, SPL, pt@bwh.harvard.edu
+
# Jorge Onieva :: Brigham and Women's Hospital :: jorgeonieva at gmail.com
#Steve Pieper, Isomics Inc, pieper@isomics.com
+
# Yangming Ou :: Massachusetts General Hospital :: yangming.ou at uphs.upenn.edu
#Csaba Pinter, Queen's University, csaba.pinter@queensu.ca
+
# Danielle Pace :: Massachusetts Institute of Technology :: dfpace at mit.edu
#Marcel Prastawa, GE Research, marcel.prastawa@ge.com
+
# Keryn Palmer :: Brigham and Women's Hospital :: kpalmer5 at partners.org
#Somia Pujol, Harvard Medical School, spujol@bwh.harvard.edu
+
# Nirav Patel :: Worcester Polytechnic Institute :: napatel at wpi.edu
#Adam Rankin, Queen's University, rankin@queensu.ca
+
# Tobias Penzkofer :: Brigham and Women's Hospital :: pt at bwh.harvard.edu
#Aymeric Reshef, Brigham & Women's Hospital, areshef@bwh.harvard.edu
+
# Steve Pieper :: Isomics, Inc. :: pieper at isomics.com
#Rahul Sastry, BWH/SPL, rahul_sastry@hms.harvard.edu
+
# Csaba Pinter :: Queen's University :: csaba.pinter at queensu.ca
#Peter Savadjiev, Brigham & Women's Hospital, petersv@bwh.harvard.edu
+
# Marcel Prastawa :: General Electric :: marcel.prastawa at ge.com
#Gregory Sharp, MGH, gcsharp@mgh.harvard.edu
+
# Somia Pujol :: Brigham and Women's Hospital :: spujol at bwh.harvard.edu
#Emylin Sousa, BWH/SPL, emylin.sousa@gmail.com
+
# Adam Rankin :: Queen's University :: rankin at queensu.ca
#Ramesh Sridharan, MIT CSAIL, rameshvs@csail.mit.edu
+
# Aymeric Reshef :: Brigham and Women's Hospital :: areshef at bwh.harvard.edu
#Matthew Toews, BWH/Harvard Medical School, mt@bwh.harvard.edu
+
# Tammy Riklin Raviv :: Ben-Gurion University :: rrtammy at ee.bgu.ac.il
#Ethan Ulrich, University of Iowa, ethan-ulrich@uiowa.edu
+
# Rahul Sastry :: Brigham and Women's Hospital :: rahul_sastry at hms.harvard.edu
#Tamas Ungi, Queen's University, ungi@queensu.ca
+
# Peter Savadjiev :: Brigham and Women's Hospital :: petersv at bwh.harvard.edu
#Kevin Wang, Princess Margaret Cancer Centre, kevin.wang@rmp.uhn.ca
+
# Gregory Sharp :: Massachusetts General Hospital :: gcsharp at mgh.harvard.edu
#David Welch, University of Iowa, david-welch@uiowa.edu
+
# Emylin Sousa :: Brigham and Women's Hospital :: emylin.sousa at gmail.com
#William Wells, Brigham & Women's Hospital, sw@bwh.harvard.edu
+
# Ramesh Sridharan :: Massachusetts Institute of Technology :: rameshvs at csail.mit.edu
#Phillip White, BWH/Harvard Medical School, white@bwh.harvard.edu
+
# Clare Tempany :: Brigham and Women's Hospital :: ctempany at bwh.harvard.edu
#Alex Yarmarkovich, ISOMICS Inc., alexy@bwh.harvard.edu
+
# Matthew Toews :: Brigham and Women's Hospital :: mt at bwh.harvard.edu
#Ryan Young, Seattle Children's Research Institute, ryan.young@seattlechildrens.org
+
# Ethan Ulrich :: University of Iowa :: ethan-ulrich at uiowa.edu
#Paolo Zaffino, University Magna Graecia of Catanzaro, p.zaffino@unicz.it
+
# Tamas Ungi :: Queen's University :: ungi at queensu.ca
#Chenxi Zhang, Brigham & Women's Hospital, chenxizhang@fudan.edu.cn
+
# Kevin Wang :: Princess Margaret Cancer Centre :: kevin.wang at rmp.uhn.ca
#Fan Zhang, University of Sydney, fzha8048@uni.sydney.edu.au
+
# David Welch :: University of Iowa :: david-welch at uiowa.edu
 +
# Sandy Wells :: Brigham and Women's Hospital :: sw at bwh.harvard.edu
 +
# Jason White :: Brigham and Women's Hospital :: white at bwh.harvard.edu
 +
# Alexander Yarmarkovich :: Isomics, Inc. :: alexy at bwh.harvard.edu
 +
# Ryan Young :: Seattle Children's Research Institute :: ryan.young at seattlechildrens.org
 +
# Paolo Zaffino :: Magna Græcia University of Catanzaro :: p.zaffino at unicz.it
 +
# Chenxi Zhang :: Brigham and Women's Hospital :: chenxizhang at fudan.edu.cn
 +
# Fan Zhang :: University of Sydney :: fzha8048 at uni.sydney.edu.au

Latest revision as of 12:14, 30 June 2017

Home < 2014 Summer Project Week

Back to Events

PW-MIT2014.png

Welcome to the web page for the 19th Project Week!

opening session

opening session

Summary

The most recent project week was the 19th event in the series. It was held June 23-27, 2014 at MIT. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, MIT, WPI, University of Utah, University of Iowa, University of Michigan, University of North Carolina at Chapel Hill, Queen’s University, University of Sydney, University Magna Graecia of Catanzaro, Old Dominion University, University of CA San Diego, Johns Hopkins University, Stony Brook University, University of Washington, NIH, Seattle Children's Research Institute, University College Cork, Ben-Gurion University, Princess Margaret Cancer Centre) and 4 companies (GE Global Research, Kitware, Fraunhofer MEVIS, Isomics Inc).

A summary of all past Project Events.

Logistics

  • Dates: June 23-27, 2014.
  • Location: MIT, Cambridge, MA.

Agenda

Time Monday, June 23 Tuesday, June 24 Wednesday, June 25 Thursday, June 26 Friday, June 27
Project Presentations NA-MIC Update Day IGT Day Reporting Day
8:30am Breakfast Breakfast Breakfast Breakfast (Stata Building 4th Floor R&D Common Dining Area)
9am-12pm 10-11:30am Breakout Session:
DICOM (Steve Pieper)

Star

11am-12noon Breakout Session: Slicer for users (Ron Kikinis)

9:00-10:30am Tutorial Contest Presentations (Sonia Pujol)

Grier Rooms
----------------------------------------
10am-12pm: Breakout Session:
Image-Guided Therapy - Neurosurgery (Alexandra Golby, Tina Kapur)
Star

10am-12pm: Project Progress Updates (Stata Building 4th Floor R&D Common Dining Area)


----------------------------------------
12pm Tutorial Contest Winner Announcement (Stata Building 4th Floor R&D Common Dining Area)

12pm-1pm Lunch Lunch Lunch Lunch Lunch boxes; Adjourn by 1:30pm
1pm-5:30pm 1-1:05pm: Ron Kikinis: Welcome

Grier Rooms
----------------------------------------
1:05-3:30pm: Project Introductions (all Project Leads) Grier Rooms
----------------------------------------
3:30-4:30pm Slicer4 Extensions (Jean-Christophe Fillion-Robin)
Grier Room (Left)

1-3pm: Breakout Session:
QIICR (Andrey Fedorov)

Kiva

1-2:30pm: Breakout Session:
Contours (Adam Rankin, Csaba Pinter)

Kiva

1-3pm: Breakout Session:
Image-Guided Therapy - Prostate Interventions (Clare Tempany, Noby Hata)

Star
----------------------------------------

5:30pm Adjourn for the day Adjourn for the day Adjourn for the day Adjourn for the day

Background

Project Week is a hands on activity -- programming using the open source NA-MIC Kit, algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.

Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.

The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.

Please make sure that you are on the na-mic-project-week mailing list

Projects

Image-Guided Therapy

Huntington's Disease

TBI

Stroke

Cardiac

Chronic Obstructive Pulmonary Disease, Lung, Chest

Head and Neck Cancer / Radiotherapy

QIICR

Feature Extraction

Additional Brain Image Analysis

Slicer4 Extensions

TMJOA RO1 - Collaboration with NAMIC

  • TMJOA (Francois Budin, Beatriz Paniagua, Lucia Cevidanes, Nicole Aucoin, Steve Pieper, Jean-Christophe Fillion-Robin, Alex Yarmarkovich)

Infrastructure

Logistics

  • Dates: June 23-27, 2014.
  • Location: Stata Center / RLE MIT.
  • REGISTRATION: https://www.regonline.com/namic2014summerprojectweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.
  • Registration Fee: $300.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Room sharing: If interested, add your name to the list: here

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration. (Please click here to register.)

  1. Hugo Aerts :: Dana Farber Cancer Institute :: hugo_aerts at dfci.harvard.edu
  2. Nassim Alikacem :: Brigham and Women's Hospital :: Nassim.Alikacem at gmail.com
  3. Parth Amin :: Wentworth Institute of Technology :: aminp at wit.edu
  4. Peter Anderson :: Retired :: traneus at verizon.net
  5. Nicole Aucoin :: Brigham and Women's Hospital :: nicole at bwh.harvard.edu
  6. Eva Breininger :: Brigham and Women's Hospital :: ebreininger at partners.org
  7. Francois Budin :: University of North Carolina :: fbudin at unc.edu
  8. Saskia Camps :: Brigham and Women's Hospital :: saskiacamps at gmail.com
  9. Lucia Cevidanes :: University of Michigan :: luciacev at umich.edu
  10. Laurent Chauvin :: Brigham and Women's Hospital :: lchauvin at bwh.harvard.edu
  11. Kanglin Chen :: Fraunhofer MEVIS, Bremen :: kanglin.chen at mevis.fraunhofer.de
  12. Adrian Dalca :: Massachusetts Institute of Technology :: adalca at MIT.EDU
  13. Alexander Derksen :: Fraunhofer MEVIS, Bremen :: alexander.derksen at mevis.fraunhofer.de
  14. Maxime Desplanques :: Massachusetts General Hospital :: maxime.desplanques at cnao.it
  15. Fotis Drakopoulos :: Old Dominion University :: fdrakopo at gmail.com
  16. Sneha Durgapal :: Brigham and Women's Hospital :: durgapalsneha at gmail.com
  17. Andriy Fedorov :: Brigham and Women's Hospital :: fedorov at bwh.harvard.edu
  18. Jean-Christophe Fillion-Robin :: Kitware, Inc. :: jchris.fillionr at kitware.com
  19. James Fishbaugh :: University of Utah :: jfishbau at sci.utah.edu
  20. Jessica Forbes :: University of Iowa :: jessica-forbes at uiowa.edu
  21. Polina Golland :: Massachusetts Institute of Technology :: polina at csail.mit.edu
  22. Jeffrey Grethe :: UCSD :: jgrethe at ncmir.ucsd.edu
  23. Rola Harmouche :: Brigham and Women's Hospital :: rolaharmouche at gmail.com
  24. Nobuhiko Hata :: Brigham and Women's Hospital :: hata at bwh.harvard.edu
  25. Jayender Jagadeesan :: Brigham and Women's Hospital :: jayender at bwh.harvard.edu
  26. Saurabh Jain :: Johns Hopkins University :: saurabh at cis.jhu.edu
  27. Hans Johnson :: University of Iowa :: hans-johnson at uiowa.edu
  28. Jayashree Kalpathy-Cramer :: Massachusetts General Hospital :: kalpathy at nmr.mgh.harvard.edu
  29. Tina Kapur :: Brigham and Women's Hospital :: tkapur at bwh.harvard.edu
  30. Ron Kikinis :: Brigham and Women's Hospital :: kikinis at bwh.harvard.edu
  31. Eun Young Regina Kim :: University of Iowa :: eunyoung-kim at uiowa.edu
  32. Franklin King :: Queen's University :: franklin.king at queensu.ca
  33. Tassilo Klein :: Brigham and Women's Hospital :: TJKlein at bwh.harvard.edu
  34. Farukh Kohistani :: Brigham and Women's Hospital :: kohistan at bc.edu
  35. Ivan Kolesov :: Stony Brook University :: ivan.kolesov1 at gmail.com
  36. Robin Kouver :: Brigham and Women's Hospital :: r.kouver at gmail.com
  37. Andras Lasso :: Queen's University :: lasso at queensu.ca
  38. Yangming Li :: University of Washington :: ymli81 at uw.edu
  39. Sidong Liu :: University of Sydney :: sliu at bwh.harvard.edu
  40. Siqi Liu :: University of Sydney :: sliu4512 at uni.sydney.edu.au
  41. Bradley Lowekamp :: National Library of Medicine :: blowekamp at mail.nih.gov
  42. Murat Maga :: Seattle Children's Research Institute :: maga at uw.edu
  43. Katie Mastrogiacomo :: Brigham and Women's Hospital :: kmast at bwh.harvard.edu
  44. Alireza Mehrtash :: Brigham and Women's Hospital :: mehrtash at bwh.harvard.edu
  45. Dominik Meier :: Brigham and Women's Hospital :: meier at bwh.harvard.edu
  46. James Miller :: General Electric :: millerjv at ge.com
  47. Luiz Otavio Murta :: Brigham and Women's Hospital :: lmurta at partners.org
  48. Vivek Narayan :: Brigham and Women's Hospital :: narayan.vivek9 at gmail.com
  49. Pietro Nardelli :: University College Cork :: pietro at bwh.harvard.edu
  50. Isaiah Norton :: Brigham and Women's Hospital :: isaiah.norton at gmail.com
  51. Jorge Onieva :: Brigham and Women's Hospital :: jorgeonieva at gmail.com
  52. Yangming Ou :: Massachusetts General Hospital :: yangming.ou at uphs.upenn.edu
  53. Danielle Pace :: Massachusetts Institute of Technology :: dfpace at mit.edu
  54. Keryn Palmer :: Brigham and Women's Hospital :: kpalmer5 at partners.org
  55. Nirav Patel :: Worcester Polytechnic Institute :: napatel at wpi.edu
  56. Tobias Penzkofer :: Brigham and Women's Hospital :: pt at bwh.harvard.edu
  57. Steve Pieper :: Isomics, Inc. :: pieper at isomics.com
  58. Csaba Pinter :: Queen's University :: csaba.pinter at queensu.ca
  59. Marcel Prastawa :: General Electric :: marcel.prastawa at ge.com
  60. Somia Pujol :: Brigham and Women's Hospital :: spujol at bwh.harvard.edu
  61. Adam Rankin :: Queen's University :: rankin at queensu.ca
  62. Aymeric Reshef :: Brigham and Women's Hospital :: areshef at bwh.harvard.edu
  63. Tammy Riklin Raviv :: Ben-Gurion University :: rrtammy at ee.bgu.ac.il
  64. Rahul Sastry :: Brigham and Women's Hospital :: rahul_sastry at hms.harvard.edu
  65. Peter Savadjiev :: Brigham and Women's Hospital :: petersv at bwh.harvard.edu
  66. Gregory Sharp :: Massachusetts General Hospital :: gcsharp at mgh.harvard.edu
  67. Emylin Sousa :: Brigham and Women's Hospital :: emylin.sousa at gmail.com
  68. Ramesh Sridharan :: Massachusetts Institute of Technology :: rameshvs at csail.mit.edu
  69. Clare Tempany :: Brigham and Women's Hospital :: ctempany at bwh.harvard.edu
  70. Matthew Toews :: Brigham and Women's Hospital :: mt at bwh.harvard.edu
  71. Ethan Ulrich :: University of Iowa :: ethan-ulrich at uiowa.edu
  72. Tamas Ungi :: Queen's University :: ungi at queensu.ca
  73. Kevin Wang :: Princess Margaret Cancer Centre :: kevin.wang at rmp.uhn.ca
  74. David Welch :: University of Iowa :: david-welch at uiowa.edu
  75. Sandy Wells :: Brigham and Women's Hospital :: sw at bwh.harvard.edu
  76. Jason White :: Brigham and Women's Hospital :: white at bwh.harvard.edu
  77. Alexander Yarmarkovich :: Isomics, Inc. :: alexy at bwh.harvard.edu
  78. Ryan Young :: Seattle Children's Research Institute :: ryan.young at seattlechildrens.org
  79. Paolo Zaffino :: Magna Græcia University of Catanzaro :: p.zaffino at unicz.it
  80. Chenxi Zhang :: Brigham and Women's Hospital :: chenxizhang at fudan.edu.cn
  81. Fan Zhang :: University of Sydney :: fzha8048 at uni.sydney.edu.au